View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11708_low_23 (Length: 322)

Name: NF11708_low_23
Description: NF11708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11708_low_23
NF11708_low_23
[»] chr5 (17 HSPs)
chr5 (81-298)||(2265436-2265653)
chr5 (33-79)||(39595409-39595455)
chr5 (36-84)||(33243626-33243674)
chr5 (33-74)||(31284289-31284330)
chr5 (33-80)||(125227-125274)
chr5 (33-76)||(1274362-1274405)
chr5 (33-84)||(2117525-2117576)
chr5 (33-79)||(3141630-3141677)
chr5 (33-84)||(9403648-9403699)
chr5 (33-84)||(19127259-19127310)
chr5 (33-76)||(19522027-19522070)
chr5 (33-76)||(28306156-28306199)
chr5 (33-82)||(3634628-3634678)
chr5 (33-79)||(20719905-20719951)
chr5 (33-79)||(24431508-24431554)
chr5 (36-76)||(18660763-18660803)
chr5 (43-79)||(42699194-42699230)
[»] chr1 (21 HSPs)
chr1 (32-74)||(31290103-31290145)
chr1 (39-82)||(51702999-51703042)
chr1 (33-86)||(22389409-22389461)
chr1 (33-74)||(51571561-51571602)
chr1 (33-84)||(48872836-48872888)
chr1 (33-76)||(2571639-2571682)
chr1 (33-76)||(3159380-3159423)
chr1 (33-76)||(8350220-8350263)
chr1 (33-76)||(30735317-30735360)
chr1 (33-76)||(37685335-37685378)
chr1 (33-76)||(37700140-37700183)
chr1 (33-79)||(40610364-40610410)
chr1 (33-79)||(43755576-43755622)
chr1 (33-79)||(49453612-49453658)
chr1 (42-79)||(4638069-4638106)
chr1 (42-79)||(49425880-49425917)
chr1 (42-74)||(7503610-7503642)
chr1 (36-76)||(15083077-15083117)
chr1 (39-79)||(28716284-28716324)
chr1 (33-76)||(35529403-35529447)
chr1 (42-74)||(45272052-45272084)
[»] chr7 (19 HSPs)
chr7 (33-84)||(8792485-8792536)
chr7 (33-79)||(40842541-40842588)
chr7 (33-79)||(10591287-10591333)
chr7 (33-79)||(12142019-12142065)
chr7 (32-68)||(12102610-12102646)
chr7 (33-79)||(7807189-7807236)
chr7 (33-76)||(13152597-13152640)
chr7 (33-76)||(30941390-30941433)
chr7 (33-79)||(40717128-40717175)
chr7 (33-76)||(44895596-44895639)
chr7 (33-74)||(19426714-19426756)
chr7 (33-79)||(21858882-21858928)
chr7 (33-74)||(32154445-32154487)
chr7 (33-74)||(7077648-7077689)
chr7 (35-79)||(32315963-32316008)
chr7 (42-74)||(28597024-28597056)
chr7 (33-72)||(43260125-43260165)
chr7 (43-79)||(43657147-43657183)
chr7 (42-74)||(47424880-47424912)
[»] chr4 (25 HSPs)
chr4 (36-74)||(3286956-3286994)
chr4 (33-79)||(1033283-1033329)
chr4 (33-79)||(15596531-15596577)
chr4 (33-74)||(51389451-51389492)
chr4 (33-79)||(1580172-1580219)
chr4 (36-79)||(5234361-5234404)
chr4 (33-76)||(5622462-5622505)
chr4 (33-79)||(22257086-22257133)
chr4 (33-76)||(23369356-23369399)
chr4 (36-87)||(25476759-25476810)
chr4 (33-76)||(26732229-26732272)
chr4 (33-79)||(31240783-31240830)
chr4 (36-79)||(31275284-31275327)
chr4 (33-79)||(36792467-36792514)
chr4 (33-76)||(37997260-37997303)
chr4 (32-79)||(38844380-38844427)
chr4 (33-84)||(42915104-42915155)
chr4 (36-79)||(46173675-46173718)
chr4 (33-79)||(11063979-11064025)
chr4 (33-79)||(30042268-30042314)
chr4 (35-76)||(40847504-40847545)
chr4 (36-79)||(2613506-2613550)
chr4 (33-73)||(31658054-31658094)
chr4 (36-76)||(37297053-37297093)
chr4 (33-76)||(51734656-51734700)
[»] chr8 (14 HSPs)
chr8 (33-84)||(34474085-34474137)
chr8 (33-76)||(13971129-13971172)
chr8 (33-79)||(32175090-32175137)
chr8 (33-79)||(21273600-21273646)
chr8 (33-76)||(27325762-27325805)
chr8 (32-74)||(38576543-38576586)
chr8 (33-79)||(45101530-45101577)
chr8 (33-79)||(7678867-7678913)
chr8 (33-79)||(10552976-10553022)
chr8 (33-79)||(23258167-23258213)
chr8 (33-74)||(38128421-38128462)
chr8 (36-76)||(22719444-22719484)
chr8 (36-76)||(31249551-31249591)
chr8 (33-76)||(33100492-33100536)
[»] chr3 (18 HSPs)
chr3 (33-84)||(11173585-11173636)
chr3 (33-79)||(46003841-46003888)
chr3 (33-79)||(20380779-20380825)
chr3 (33-79)||(46473263-46473309)
chr3 (36-79)||(7231896-7231939)
chr3 (33-76)||(26014816-26014859)
chr3 (33-76)||(42357104-42357147)
chr3 (33-79)||(43169644-43169691)
chr3 (39-74)||(44695153-44695188)
chr3 (33-76)||(46623911-46623954)
chr3 (33-76)||(47472333-47472376)
chr3 (33-76)||(52939657-52939700)
chr3 (33-79)||(29706038-29706084)
chr3 (33-74)||(31249216-31249258)
chr3 (33-74)||(51650491-51650533)
chr3 (42-79)||(6126599-6126636)
chr3 (33-76)||(10811139-10811183)
chr3 (33-85)||(13735124-13735176)
[»] chr2 (11 HSPs)
chr2 (33-79)||(36133109-36133155)
chr2 (33-74)||(12600183-12600224)
chr2 (33-76)||(2464272-2464315)
chr2 (33-76)||(8848719-8848762)
chr2 (33-76)||(18254233-18254276)
chr2 (33-76)||(27490754-27490797)
chr2 (33-76)||(41042258-41042301)
chr2 (33-74)||(45515494-45515536)
chr2 (33-74)||(11164271-11164312)
chr2 (42-79)||(34138926-34138963)
chr2 (33-76)||(43666702-43666746)
[»] chr6 (6 HSPs)
chr6 (33-76)||(8098619-8098662)
chr6 (33-84)||(16336955-16337006)
chr6 (33-76)||(22079587-22079630)
chr6 (33-76)||(25811862-25811905)
chr6 (33-76)||(34047391-34047434)
chr6 (33-74)||(2241721-2241762)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 81 - 298
Target Start/End: Original strand, 2265436 - 2265653
Alignment:
Q  81 ttttggtatatgatactgtttgcatgtttggtagcatgatggatttgtcgaaatcacgttgagtcatcataatttaataaaagctatactctatagcttt 180  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2265436 ttttagtatatgatactgtttgcatgtttggtagcatgatggatttgtcgaaatcacgttgagtcatcataatttaataaaagctatactctatagcttt 2265535  T
Q  181 tgcgaaatcataatggatcaccgaccatgattttgagaaaccctcggcttctttataattgtagttcttgcagaattatttgttcttatctattaacctt 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2265536 tgcgaaatcataatggatcaccgaccatgattttgagaaaccctcggcttctttataattgtagttcttgcagaattatttgttcttatctattaacctt 2265635  T
Q  281 aaaacgtcaaagcttctt 298  Q
    ||||||||||||||||||    
T  2265636 aaaacgtcaaagcttctt 2265653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 39595409 - 39595455
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||    
T  39595409 aagttgtcacaaaagttgtatcaaatggttgttcaaatatcattact 39595455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 33243674 - 33243626
Alignment:
Q  36 ttgtcacaaaagttgtgtgaaatggttgttcaaatatcattactatttt 84  Q
    |||||||||||||| | ||||||||||||||||||||||||||| ||||    
T  33243674 ttgtcacaaaagttatctgaaatggttgttcaaatatcattactctttt 33243626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 31284330 - 31284289
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatca 74  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  31284330 aagttgtcgcaaaagttgtatgaaatggttgttcaaatatca 31284289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 125227 - 125274
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattacta 80  Q
    |||||||| |||||||||| | |||||||||||||||||||| |||||    
T  125227 aagttgtcgcaaaagttgtatcaaatggttgttcaaatatcactacta 125274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 1274405 - 1274362
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  1274405 aagttgtcacaaaagttgtcaaaaatggttgttcaaatatcatt 1274362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 2117576 - 2117525
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattactatttt 84  Q
    ||||||||||||||||||| | |||| ||||||||||||||| |||| ||||    
T  2117576 aagttgtcacaaaagttgtatcaaatagttgttcaaatatcactactctttt 2117525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 3141630 - 3141677
Alignment:
Q  33 aagttgtca-caaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    ||||||||| |||||||||| |||||||||||||||||||||| ||||    
T  3141630 aagttgtcatcaaaagttgtatgaaatggttgttcaaatatcactact 3141677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 9403648 - 9403699
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattactatttt 84  Q
    ||||||||||||||||||| | ||||||||||| |||||||| |||| ||||    
T  9403648 aagttgtcacaaaagttgtatcaaatggttgtttaaatatcactactctttt 9403699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 19127259 - 19127310
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattactatttt 84  Q
    |||||||| |||||||||| | |||||||||||||||||||| |||| ||||    
T  19127259 aagttgtcgcaaaagttgtttaaaatggttgttcaaatatcactactctttt 19127310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 19522027 - 19522070
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  19522027 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 19522070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 28306156 - 28306199
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  28306156 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 28306199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 3634628 - 3634678
Alignment:
Q  33 aagttgtca-caaaagttgtgtgaaatggttgttcaaatatcattactatt 82  Q
    ||||||||| |||||||||| || ||||||||||||||||||| |||||||    
T  3634628 aagttgtcatcaaaagttgtatgtaatggttgttcaaatatcactactatt 3634678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 20719951 - 20719905
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    ||||||||||||||||||| | |||||| ||||||||||||| ||||    
T  20719951 aagttgtcacaaaagttgtctcaaatggatgttcaaatatcactact 20719905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 24431554 - 24431508
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||||| |||||| | |||||||||||||||||||| ||||    
T  24431554 aagttgtcacaatagttgtctcaaatggttgttcaaatatcactact 24431508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 18660803 - 18660763
Alignment:
Q  36 ttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    ||||||||||||||||   ||||||||||||||||||||||    
T  18660803 ttgtcacaaaagttgtcaaaaatggttgttcaaatatcatt 18660763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 42699194 - 42699230
Alignment:
Q  43 aaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  42699194 aaaagttgtatgaaatagttgttcaaatatcattact 42699230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 31290145 - 31290103
Alignment:
Q  32 taagttgtcacaaaagttgtgtgaaatggttgttcaaatatca 74  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  31290145 taagttgtcacaaaagttgtgtgaaatggttgttcaaatatca 31290103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 51703042 - 51702999
Alignment:
Q  39 tcacaaaagttgtgtgaaatggttgttcaaatatcattactatt 82  Q
    ||||||||||||| |||||||||||||||||||||| |||||||    
T  51703042 tcacaaaagttgtctgaaatggttgttcaaatatcactactatt 51702999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 22389461 - 22389409
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattactattttgg 86  Q
    ||||||||||||||||||  | ||||||||||||||||||||||||| ||||||    
T  22389461 aagttgtcacaaaagttga-tcaaatggttgttcaaatatcattactcttttgg 22389409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 51571561 - 51571602
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatca 74  Q
    ||||||||||||||||||| | ||||||||||||||||||||    
T  51571561 aagttgtcacaaaagttgtattaaatggttgttcaaatatca 51571602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 48872888 - 48872836
Alignment:
Q  33 aagttgtcac-aaaagttgtgtgaaatggttgttcaaatatcattactatttt 84  Q
    |||||||||| ||||||||| |||||||||||||||||||||| |||| ||||    
T  48872888 aagttgtcaccaaaagttgtatgaaatggttgttcaaatatcactactctttt 48872836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 2571682 - 2571639
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  2571682 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 2571639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 3159423 - 3159380
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  3159423 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 3159380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 8350220 - 8350263
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  8350220 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 8350263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 30735317 - 30735360
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  30735317 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 30735360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 37685378 - 37685335
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  37685378 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 37685335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 37700140 - 37700183
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  37700140 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 37700183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 40610364 - 40610410
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    ||||||||||||||||||| | |||||| ||||||||||||| ||||    
T  40610364 aagttgtcacaaaagttgtctcaaatggatgttcaaatatcactact 40610410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 43755622 - 43755576
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||||| |||||| | |||||| ||||||||||||||||||    
T  43755622 aagttgtcacaagagttgtctcaaatggatgttcaaatatcattact 43755576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 49453612 - 49453658
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    ||||||||||||||||||| | |||| ||||||||||||||| ||||    
T  49453612 aagttgtcacaaaagttgtatcaaatagttgttcaaatatcactact 49453658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 4638069 - 4638106
Alignment:
Q  42 caaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  4638069 caaaagttgtatgaaatggttgttcaaatatcactact 4638106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 49425880 - 49425917
Alignment:
Q  42 caaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  49425880 caaaagttgtatgaaatggttgttcaaatatcactact 49425917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 7503610 - 7503642
Alignment:
Q  42 caaaagttgtgtgaaatggttgttcaaatatca 74  Q
    |||||||||| ||||||||||||||||||||||    
T  7503610 caaaagttgtatgaaatggttgttcaaatatca 7503642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 15083077 - 15083117
Alignment:
Q  36 ttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    ||||||||||||||||   ||||||||||||||||||||||    
T  15083077 ttgtcacaaaagttgtcaaaaatggttgttcaaatatcatt 15083117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 28716284 - 28716324
Alignment:
Q  39 tcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    ||||||||||||| | |||||||||||||||||||| ||||    
T  28716284 tcacaaaagttgtctcaaatggttgttcaaatatcactact 28716324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 35529403 - 35529447
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaat-ggttgttcaaatatcatt 76  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||    
T  35529403 aagttgtcacaaaagttgtctaaaatcggttgttcaaatatcatt 35529447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 45272084 - 45272052
Alignment:
Q  42 caaaagttgtgtgaaatggttgttcaaatatca 74  Q
    |||||||||| ||||||||||||||||||||||    
T  45272084 caaaagttgtatgaaatggttgttcaaatatca 45272052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 8792536 - 8792485
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattactatttt 84  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||| ||||    
T  8792536 aagttgtcacaaaagttgtatcaaatggttgttcaaatatcattactctttt 8792485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 40842541 - 40842588
Alignment:
Q  33 aagttgtcac-aaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||    
T  40842541 aagttgtcaccaaaagttgtatgaaatggttgttcaaatatcattact 40842588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 10591287 - 10591333
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    ||||||||||||||||||| | |||||||||||||||||||| ||||    
T  10591287 aagttgtcacaaaagttgtctcaaatggttgttcaaatatcactact 10591333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 12142019 - 12142065
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    ||||||||||||||||||| | |||||||||||||||||||| ||||    
T  12142019 aagttgtcacaaaagttgtatcaaatggttgttcaaatatcactact 12142065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 12102646 - 12102610
Alignment:
Q  32 taagttgtcacaaaagttgtgtgaaatggttgttcaa 68  Q
    |||||||||||||||||||| ||||||||||||||||    
T  12102646 taagttgtcacaaaagttgtctgaaatggttgttcaa 12102610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 7807189 - 7807236
Alignment:
Q  33 aagttgtca-caaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    ||||||||| |||||||||| |||||||||||||||||||||| ||||    
T  7807189 aagttgtcatcaaaagttgtatgaaatggttgttcaaatatcactact 7807236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 13152640 - 13152597
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  13152640 aagttgtcacaaaagttgtcaaaaatggttgttcaaatatcatt 13152597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 30941433 - 30941390
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  30941433 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 30941390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 40717175 - 40717128
Alignment:
Q  33 aagttgtcacaaaa-gttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||||||| ||||| |||||||||||||||||||||| ||||    
T  40717175 aagttgtcacaaaaagttgtatgaaatggttgttcaaatatcactact 40717128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 44895596 - 44895639
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  44895596 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 44895639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 19426714 - 19426756
Alignment:
Q  33 aagttgtcac-aaaagttgtgtgaaatggttgttcaaatatca 74  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  19426714 aagttgtcaccaaaagttgtatgaaatggttgttcaaatatca 19426756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 21858882 - 21858928
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    ||||| ||||||||||||| | |||||||||||||||||||| ||||    
T  21858882 aagttatcacaaaagttgtttaaaatggttgttcaaatatcactact 21858928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 32154487 - 32154445
Alignment:
Q  33 aagttgtcac-aaaagttgtgtgaaatggttgttcaaatatca 74  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  32154487 aagttgtcaccaaaagttgtatgaaatggttgttcaaatatca 32154445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 7077689 - 7077648
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatca 74  Q
    ||||||||||||||||||| | |||| |||||||||||||||    
T  7077689 aagttgtcacaaaagttgtttaaaatagttgttcaaatatca 7077648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 32315963 - 32316008
Alignment:
Q  35 gttgtcacaaaagttgt-gtgaaatggttgttcaaatatcattact 79  Q
    ||||||||||||||||| || |||| ||||||||||||||||||||    
T  32315963 gttgtcacaaaagttgtcgtcaaatagttgttcaaatatcattact 32316008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 28597024 - 28597056
Alignment:
Q  42 caaaagttgtgtgaaatggttgttcaaatatca 74  Q
    |||||||||| ||||||||||||||||||||||    
T  28597024 caaaagttgtatgaaatggttgttcaaatatca 28597056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 43260125 - 43260165
Alignment:
Q  33 aagttgtca-caaaagttgtgtgaaatggttgttcaaatat 72  Q
    ||||||||| |||||||||| ||||||||||||||||||||    
T  43260125 aagttgtcatcaaaagttgtatgaaatggttgttcaaatat 43260165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 43657147 - 43657183
Alignment:
Q  43 aaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  43657147 aaaagttgtatgaaatggttgttcaaatatcactact 43657183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 47424912 - 47424880
Alignment:
Q  42 caaaagttgtgtgaaatggttgttcaaatatca 74  Q
    |||||||||| ||||||||||||||||||||||    
T  47424912 caaaagttgtatgaaatggttgttcaaatatca 47424880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 3286956 - 3286994
Alignment:
Q  36 ttgtcacaaaagttgtgtgaaatggttgttcaaatatca 74  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3286956 ttgtcacaaaagttgtgtgaaatggttgttcaaatatca 3286994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 1033283 - 1033329
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    ||||||||||||||||||| | |||||||||||||||||||| ||||    
T  1033283 aagttgtcacaaaagttgtttaaaatggttgttcaaatatcactact 1033329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 15596531 - 15596577
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    ||||||||||||||||||| | |||||||||||||||||||| ||||    
T  15596531 aagttgtcacaaaagttgtttaaaatggttgttcaaatatcactact 15596577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 51389451 - 51389492
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatca 74  Q
    ||||||||||||||||||| | ||||||||||||||||||||    
T  51389451 aagttgtcacaaaagttgtatcaaatggttgttcaaatatca 51389492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 1580219 - 1580172
Alignment:
Q  33 aagttgtcacaaaa-gttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||||||| ||||| |||||||||||||||||||||| ||||    
T  1580219 aagttgtcacaaaaagttgtatgaaatggttgttcaaatatcactact 1580172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 5234404 - 5234361
Alignment:
Q  36 ttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||||||||| | |||||||||||||||||||| ||||    
T  5234404 ttgtcacaaaagttgtatcaaatggttgttcaaatatcactact 5234361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 5622505 - 5622462
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  5622505 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 5622462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 22257133 - 22257086
Alignment:
Q  33 aagttgtcac-aaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||| ||||||||| |||||||||||||||||||||| ||||    
T  22257133 aagttgtcaccaaaagttgtatgaaatggttgttcaaatatcactact 22257086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 23369356 - 23369399
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  23369356 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 23369399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 25476759 - 25476810
Alignment:
Q  36 ttgtcacaaaagttgtgtgaaatggttgttcaaatatcattactattttggt 87  Q
    |||||||| ||||||| | |||||| |||||||||||||||||| |||||||    
T  25476759 ttgtcacagaagttgtctcaaatggatgttcaaatatcattactcttttggt 25476810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 26732272 - 26732229
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||| |||||||||  ||||||||||||||||||||||    
T  26732272 aagttgtcactaaagttgtgaaaaatggttgttcaaatatcatt 26732229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 31240783 - 31240830
Alignment:
Q  33 aagttgtcac-aaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||| ||||||||| |||||||||||||||||||||| ||||    
T  31240783 aagttgtcaccaaaagttgtatgaaatggttgttcaaatatcactact 31240830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 31275284 - 31275327
Alignment:
Q  36 ttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||||||||| | |||||||||||||||||||| ||||    
T  31275284 ttgtcacaaaagttgtatcaaatggttgttcaaatatcactact 31275327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 36792467 - 36792514
Alignment:
Q  33 aagttgtcac-aaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||| ||||||||| |||||||||||||||||||||| ||||    
T  36792467 aagttgtcaccaaaagttgtatgaaatggttgttcaaatatcactact 36792514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 37997303 - 37997260
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  37997303 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 37997260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 38844427 - 38844380
Alignment:
Q  32 taagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||||||||||||| | | ||||||||||||||| |||||||    
T  38844427 taagttgtcacaaaagttgtctcatatggttgttcaaataacattact 38844380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 42915155 - 42915104
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattactatttt 84  Q
    ||||||||||||||||||| | |||| ||||||||||||||| |||| ||||    
T  42915155 aagttgtcacaaaagttgtatcaaatagttgttcaaatatcactactctttt 42915104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 46173675 - 46173718
Alignment:
Q  36 ttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||||||||| | |||||||| ||||||||||||||||    
T  46173675 ttgtcacaaaagttgtatcaaatggttattcaaatatcattact 46173718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 11064025 - 11063979
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||| |||||||| | |||||||||||||||||||| ||||    
T  11064025 aagttgtcaccaaagttgtcttaaatggttgttcaaatatcactact 11063979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 30042268 - 30042314
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    ||||| ||| ||||||||| |||||| ||||||||||||||||||||    
T  30042268 aagttatcataaaagttgtatgaaatagttgttcaaatatcattact 30042314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 40847504 - 40847545
Alignment:
Q  35 gttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    ||||||| ||| ||||||| ||||||||||||||||||||||    
T  40847504 gttgtcaaaaaggttgtgtcaaatggttgttcaaatatcatt 40847545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 2613550 - 2613506
Alignment:
Q  36 ttgtcacaaaagttgtg-tgaaatggttgttcaaatatcattact 79  Q
    ||||||||||||||||  | |||||||||||||||||||||||||    
T  2613550 ttgtcacaaaagttgttatcaaatggttgttcaaatatcattact 2613506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 31658054 - 31658094
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatc 73  Q
    ||||||||||||||| ||| | |||||||||||||||||||    
T  31658054 aagttgtcacaaaagctgtatcaaatggttgttcaaatatc 31658094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 37297093 - 37297053
Alignment:
Q  36 ttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    ||||||||||||||||   ||||||||||||||||||||||    
T  37297093 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 37297053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 51734656 - 51734700
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaa-tggttgttcaaatatcatt 76  Q
    ||||||||||||||||||| | ||| |||||||||||||||||||    
T  51734656 aagttgtcacaaaagttgtttaaaagtggttgttcaaatatcatt 51734700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 34474085 - 34474137
Alignment:
Q  33 aagttgtcac-aaaagttgtgtgaaatggttgttcaaatatcattactatttt 84  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  34474085 aagttgtcaccaaaagttgtatgaaatggttgttcaaatatcattactctttt 34474137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 13971172 - 13971129
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    ||||||||||||||||||| |||||||| |||||||||||||||    
T  13971172 aagttgtcacaaaagttgtatgaaatggatgttcaaatatcatt 13971129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 32175090 - 32175137
Alignment:
Q  33 aagttgtcac-aaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||    
T  32175090 aagttgtcaccaaaagttgtatgaaatggttgttcaaatatcattact 32175137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 21273646 - 21273600
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    ||||||||||||||||||| |||||| ||||||||||||||| ||||    
T  21273646 aagttgtcacaaaagttgtatgaaatagttgttcaaatatcactact 21273600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 27325805 - 27325762
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  27325805 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 27325762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 38576543 - 38576586
Alignment:
Q  32 taagttgtcac-aaaagttgtgtgaaatggttgttcaaatatca 74  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||    
T  38576543 taagttgtcaccaaaagttgtttgaaatggttgttcaaatatca 38576586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 45101530 - 45101577
Alignment:
Q  33 aagttgtcac-aaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||| ||||||||| |||||||||||||||||||||| ||||    
T  45101530 aagttgtcaccaaaagttgtatgaaatggttgttcaaatatcactact 45101577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 7678867 - 7678913
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    ||||||| ||||||||||| | |||| ||||||||||||||||||||    
T  7678867 aagttgttacaaaagttgtatcaaatagttgttcaaatatcattact 7678913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 10553022 - 10552976
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||| |||||||| | ||||||||||| |||||||||||||    
T  10553022 aagttgtcaccaaagttgtctaaaatggttgtttaaatatcattact 10552976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 23258167 - 23258213
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||||||| |||| | |||||||||||||||||||| ||||    
T  23258167 aagttgtcacaaaaattgtttcaaatggttgttcaaatatcactact 23258213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 38128462 - 38128421
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatca 74  Q
    |||||||||||||| |||| | ||||||||||||||||||||    
T  38128462 aagttgtcacaaaaattgtttaaaatggttgttcaaatatca 38128421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 22719484 - 22719444
Alignment:
Q  36 ttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    ||||||||||||||||   ||||||||||||||||||||||    
T  22719484 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 22719444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 31249551 - 31249591
Alignment:
Q  36 ttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    ||||||||||||||||   ||||||||||||||||||||||    
T  31249551 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 31249591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 33100492 - 33100536
Alignment:
Q  33 aagttgtcacaaaagttgtg-tgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||  | ||||||||||||||||||||||    
T  33100492 aagttgtcacaaaagttgttataaaatggttgttcaaatatcatt 33100536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 11173585 - 11173636
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattactatttt 84  Q
    ||||||||||||||||||| | |||||||||||||||||| |||||| ||||    
T  11173585 aagttgtcacaaaagttgtatcaaatggttgttcaaatattattactctttt 11173636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 46003841 - 46003888
Alignment:
Q  33 aagttgtcac-aaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||    
T  46003841 aagttgtcaccaaaagttgtatgaaatggttgttcaaatatcattact 46003888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 20380825 - 20380779
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    ||||||||||||||||||| | |||||||||||||||||||| ||||    
T  20380825 aagttgtcacaaaagttgtttaaaatggttgttcaaatatcactact 20380779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 46473263 - 46473309
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    ||||||||| ||||||||| | |||||||||||||||||||||||||    
T  46473263 aagttgtcataaaagttgtatcaaatggttgttcaaatatcattact 46473309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 7231939 - 7231896
Alignment:
Q  36 ttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||||||||| | |||||||||||||||||||| ||||    
T  7231939 ttgtcacaaaagttgtatcaaatggttgttcaaatatcactact 7231896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 26014859 - 26014816
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  26014859 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 26014816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 42357104 - 42357147
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  42357104 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 42357147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 43169691 - 43169644
Alignment:
Q  33 aagttgtcac-aaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||| ||||||||| |||||||||||||||||||||| ||||    
T  43169691 aagttgtcaccaaaagttgtatgaaatggttgttcaaatatcactact 43169644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 44695153 - 44695188
Alignment:
Q  39 tcacaaaagttgtgtgaaatggttgttcaaatatca 74  Q
    ||||||||||||| ||||||||||||||||||||||    
T  44695153 tcacaaaagttgtatgaaatggttgttcaaatatca 44695188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 46623954 - 46623911
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  46623954 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 46623911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 47472376 - 47472333
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  47472376 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 47472333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 52939700 - 52939657
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  52939700 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 52939657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 29706038 - 29706084
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    ||||||||||||||||||| | |||| ||||||||||||||| ||||    
T  29706038 aagttgtcacaaaagttgtatcaaatagttgttcaaatatcactact 29706084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 31249258 - 31249216
Alignment:
Q  33 aagttgtcac-aaaagttgtgtgaaatggttgttcaaatatca 74  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  31249258 aagttgtcaccaaaagttgtatgaaatggttgttcaaatatca 31249216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 51650491 - 51650533
Alignment:
Q  33 aagttgtcac-aaaagttgtgtgaaatggttgttcaaatatca 74  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  51650491 aagttgtcaccaaaagttgtatgaaatggttgttcaaatatca 51650533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 6126599 - 6126636
Alignment:
Q  42 caaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  6126599 caaaagttgtatgaaatggttgttcaaatatcactact 6126636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 10811183 - 10811139
Alignment:
Q  33 aagttgtcacaaaagttgtg-tgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||  | ||||||||||||||||||||||    
T  10811183 aagttgtcacaaaagttgtcataaaatggttgttcaaatatcatt 10811139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 13735176 - 13735124
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattactattttg 85  Q
    |||||||||||||| ||||   |||||||||||||||||| ||| ||||||||    
T  13735176 aagttgtcacaaaaattgtaaaaaatggttgttcaaatattatttctattttg 13735124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 36133109 - 36133155
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    ||||||||||||||||||| |||||| ||||||||||||||| ||||    
T  36133109 aagttgtcacaaaagttgtatgaaatagttgttcaaatatcactact 36133155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 12600183 - 12600224
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatca 74  Q
    ||||||||||||||||||| |||||| |||||||||||||||    
T  12600183 aagttgtcacaaaagttgtatgaaatagttgttcaaatatca 12600224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 2464272 - 2464315
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    ||||||||||||||||||| | |||||| |||||||||||||||    
T  2464272 aagttgtcacaaaagttgtatcaaatggatgttcaaatatcatt 2464315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 8848719 - 8848762
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  8848719 aagttgtcacaaaagttgtcaaaaatggttgttcaaatatcatt 8848762  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 18254233 - 18254276
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  18254233 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 18254276  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 27490754 - 27490797
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  27490754 aagttgtcacaaaagttgtcaaaaatggttgttcaaatatcatt 27490797  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 41042301 - 41042258
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  41042301 aagttgtcacaaaagttgttaaaaatggttgttcaaatatcatt 41042258  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 45515536 - 45515494
Alignment:
Q  33 aagttgtcac-aaaagttgtgtgaaatggttgttcaaatatca 74  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  45515536 aagttgtcaccaaaagttgtatgaaatggttgttcaaatatca 45515494  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 11164312 - 11164271
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatca 74  Q
    ||||||||||||||||||| | |||| |||||||||||||||    
T  11164312 aagttgtcacaaaagttgtatcaaatagttgttcaaatatca 11164271  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 34138963 - 34138926
Alignment:
Q  42 caaaagttgtgtgaaatggttgttcaaatatcattact 79  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  34138963 caaaagttgtatgaaatggttgttcaaatatcactact 34138926  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 43666702 - 43666746
Alignment:
Q  33 aagttgtcacaaaagttgt-gtgaaatggttgttcaaatatcatt 76  Q
    ||||||||||||||||||| || |||||| |||||||||||||||    
T  43666702 aagttgtcacaaaagttgtcgttaaatggatgttcaaatatcatt 43666746  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 8098619 - 8098662
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  8098619 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 8098662  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 16337006 - 16336955
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcattactatttt 84  Q
    |||||||||||| |||||| | |||||| |||||||||||||||||| ||||    
T  16337006 aagttgtcacaagagttgtctcaaatggatgttcaaatatcattactctttt 16336955  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 22079587 - 22079630
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  22079587 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 22079630  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 25811862 - 25811905
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  25811862 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 25811905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 34047434 - 34047391
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatcatt 76  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  34047434 aagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatt 34047391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 2241762 - 2241721
Alignment:
Q  33 aagttgtcacaaaagttgtgtgaaatggttgttcaaatatca 74  Q
    ||||| ||||||||||||| | ||||||||||||||||||||    
T  2241762 aagttatcacaaaagttgtatcaaatggttgttcaaatatca 2241721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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