View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11708_low_24 (Length: 298)
Name: NF11708_low_24
Description: NF11708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11708_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 14791445 - 14791164
Alignment:
| Q |
1 |
aaaggagaataattccaccac-------agtgagaatatgatttgtgatcaaagcgtgggttctgtttcatccagcgatgccaatggctggcataatgtg |
93 |
Q |
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| T |
14791445 |
aaaggagaataattccaccacgtccagtagtgagaatatgatttgtgatcaaagcgtgggttctgtttcatccagcgatgccaatggctggcataatgtg |
14791346 |
T |
|
| Q |
94 |
atcgttctttcaaaagtatactagttattttagtagagttttcttaaactttcattgcaattatcccttttattttactattggatgtaagtatgcttat |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14791345 |
atcgttctttcaaaagtatactagttattttagtagagttttcttaaactttcattgcaattatcccttttattttactattggatgtaagtatgcttat |
14791246 |
T |
|
| Q |
194 |
gttaattagcattctgattatgaactcttccatcaattgtctttacaacatatattgtcttcataggtagaagggccgttcg |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||| ||||| |
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| T |
14791245 |
gttaattagcattctgattatgaactcttccatcaattgtctttacaacacatattgtgttgataggtagaagggctgttcg |
14791164 |
T |
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