View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11708_low_27 (Length: 241)
Name: NF11708_low_27
Description: NF11708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11708_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 7698724 - 7698892
Alignment:
| Q |
1 |
cctgtaggttttttggagggttgtgcattatatgattcctacttatccttattcatccacatcaattattgagctcagtttgtgtttgattgattaagtg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7698724 |
cctgtaggctttttggagggttgtgcattatatgattcctacttatccttattcattcacatcaattattgagctcagtttgtgtttgattgagtaagtg |
7698823 |
T |
|
| Q |
101 |
atctttgcacatgattagagttaaagctgaagtaaattcgtacagttttatgtcttttggtaatataatctcataacta |
179 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7698824 |
atctttgcacatgattagagttaaagc----------tcgtatagttttatgtcttttggtaatataatctcataacta |
7698892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 22268195 - 22268154
Alignment:
| Q |
179 |
aaaaatcaaattgtttgggctccagtggcaagaagctcattc |
220 |
Q |
| |
|
||||| ||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
22268195 |
aaaaaccaagttgtttgggctccagtggcaaggagctcattc |
22268154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 42292186 - 42292148
Alignment:
| Q |
182 |
aatcaaattgtttgggctccagtggcaagaagctcattc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42292186 |
aatcaaattgtttgggctccagtggcaaggagctcattc |
42292148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 38297124 - 38297085
Alignment:
| Q |
185 |
caaattgtttgggctccagtggcaagaagctcattctaag |
224 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
38297124 |
caaattgtttgggctccagtggcaaggagctccttctaag |
38297085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 42861378 - 42861343
Alignment:
| Q |
185 |
caaattgtttgggctccagtggcaagaagctcattc |
220 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42861378 |
caaattgtttgggctccagtggcaaggagctcattc |
42861343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 6358307 - 6358276
Alignment:
| Q |
189 |
ttgtttgggctccagtggcaagaagctcattc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
6358307 |
ttgtttgggctccagtggcaagaagctcattc |
6358276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 45263832 - 45263796
Alignment:
| Q |
180 |
aaaatcaaattgtttgggctccagtggcaagaagctc |
216 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
45263832 |
aaaatcaagttgtttgggctccagtggcaaggagctc |
45263796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 9147245 - 9147286
Alignment:
| Q |
179 |
aaaaatcaaattgtttgggctccagtggcaagaagctcattc |
220 |
Q |
| |
|
||||||||| |||||||||||||||||| ||| ||||||||| |
|
|
| T |
9147245 |
aaaaatcaagttgtttgggctccagtgggaaggagctcattc |
9147286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 9179902 - 9179861
Alignment:
| Q |
179 |
aaaaatcaaattgtttgggctccagtggcaagaagctcattc |
220 |
Q |
| |
|
||||| ||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
9179902 |
aaaaaccaagttgtttgggctccagtggcaaggagctcattc |
9179861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 295696 - 295667
Alignment:
| Q |
181 |
aaatcaaattgtttgggctccagtggcaag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
295696 |
aaatcaaattgtttgggctccagtggcaag |
295667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University