View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11708_low_28 (Length: 240)
Name: NF11708_low_28
Description: NF11708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11708_low_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5455527 - 5455303
Alignment:
| Q |
1 |
ttacgaatatgaaaccttgaacagttcaattattactagagtggtgctagacccaaatggattatcacaacgtttacaatggacagataggacacagaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5455527 |
ttacgaatatgaaaccttgaacagttcaattattactagagtggtactagacccaaatggattatcacaacgtttacaatggacagataggacacagaat |
5455428 |
T |
|
| Q |
101 |
tgggaagctttagcgaatcgtcctgcagaccagtgtgatgcttatgccttttgtggtatcaattctaactgcaatattaatgactttccaatatgtgaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5455427 |
tgggaagctttagcgaatcgtcctgcagaccagtgtgatgcttatgccttttgtggtatcaattctaactgcaatattaatgactttccaatatgtgaat |
5455328 |
T |
|
| Q |
201 |
gtttggaaggtttcatgccaaaatt |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5455327 |
gtttggaaggtttcatgccaaaatt |
5455303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5446965 - 5446741
Alignment:
| Q |
1 |
ttacgaatatgaaaccttgaacagttcaattattactagagtggtgctagacccaaatggattatcacaacgtttacaatggacagataggacacagaat |
100 |
Q |
| |
|
|||| |||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||| ||||||| || |
|
|
| T |
5446965 |
ttaccaatatgaaactttgagcagttcaattattactagagtcgtgctagacccaaatggaatatcacaacgcttacaatggacagataagacacaggat |
5446866 |
T |
|
| Q |
101 |
tgggaagctttagcgaatcgtcctgcagaccagtgtgatgcttatgccttttgtggtatcaattctaactgcaatattaatgactttccaatatgtgaat |
200 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
5446865 |
tgggcggctttagccaaacgtcctgcagaccagtgtgatgcttataccttttgtggtatcaattctaactgcaatatgaatgactttccaatatgtgtat |
5446766 |
T |
|
| Q |
201 |
gtttggaaggtttcatgccaaaatt |
225 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
5446765 |
gtttggaaggtttcaggccaaaatt |
5446741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 5485278 - 5485062
Alignment:
| Q |
6 |
aatatgaaaccttgaacagttcaattattactagagtggtgctagacccaaatggattatcacaacgtttacaatggacagataggacacagaattggga |
105 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||| |||||||||| ||| ||||| | ||||||||||| |||||| ||||||||||||| | |||||| |
|
|
| T |
5485278 |
aatatgaaactttgaacagttcaattaatactagattggtgctagatccatatggaatgtcacaacgttttcaatggtcagataggacacaaatttggga |
5485179 |
T |
|
| Q |
106 |
agctttagcgaatcgtcctgcagaccagtgtgatgcttatgccttttgtggtatcaattctaactgcaatattaatgactttccaatatgtgaatgtttg |
205 |
Q |
| |
|
||| || | ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |||||||||||||||||| ||| |
|
|
| T |
5485178 |
ggctatatcttctcgtcctgcagaccagtgtgatgcttatgacttgtgtggtatcaattctaactgcaatggcgaaagctttccaatatgtgaatgcttg |
5485079 |
T |
|
| Q |
206 |
gaaggtttcatgccaaa |
222 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
5485078 |
gaaggtttcatgtcaaa |
5485062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 5490699 - 5490480
Alignment:
| Q |
6 |
aatatgaaaccttgaacagttcaattattactagagtggtgctagacccaaatggattatcacaacgtttacaatggacagataggacacagaattggga |
105 |
Q |
| |
|
|||||||||| || ||||||||||||| ||||||| |||||||||| ||| ||||| |||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
5490699 |
aatatgaaactttaaacagttcaattaatactagattggtgctagatccatatggaacttcacaacgtttacaatggtcagataggacacagatttggga |
5490600 |
T |
|
| Q |
106 |
agctttagcgaatcgtcctgcagaccagtgtgatgcttatgccttttgtggtatcaattctaactgcaatattaatgactttccaatatgtgaatgtttg |
205 |
Q |
| |
|
||| || || |||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| | || |||||||||||||||||| || |
|
|
| T |
5490599 |
ggctatatattctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaatatgtgaatgctta |
5490500 |
T |
|
| Q |
206 |
gaaggtttcatgccaaaatt |
225 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5490499 |
gaaggtttcatgccaaaatt |
5490480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 5526352 - 5526133
Alignment:
| Q |
6 |
aatatgaaaccttgaacagttcaattattactagagtggtgctagacccaaatggattatcacaacgtttacaatggacagataggacacagaattggga |
105 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||| |||||||||| |||| ||| | ||||||||| | |||||| ||||||||||||| | |||||| |
|
|
| T |
5526352 |
aatatgaaactttgaacagttcaattaatactagactggtgctagattcaaacggaatttcacaacgtcttcaatggtcagataggacacaaacttggga |
5526253 |
T |
|
| Q |
106 |
agctttagcgaatcgtcctgcagaccagtgtgatgcttatgccttttgtggtatcaattctaactgcaatattaatgactttccaatatgtgaatgtttg |
205 |
Q |
| |
|
||| || | |||||||| ||||||||||||| |||||| | |||||||||||||||||| |||||| || || ||||||||||||| |||| ||| |
|
|
| T |
5526252 |
ggctatatcttctcgtcctgtagaccagtgtgatccttatgacacttgtggtatcaattctaattgcaatgttgatatctttccaatatgtaaatgcttg |
5526153 |
T |
|
| Q |
206 |
gaaggtttcatgccaaaatt |
225 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5526152 |
gaaggtttcatgccaaaatt |
5526133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 5503512 - 5503294
Alignment:
| Q |
6 |
aatatgaaaccttgaacagttcaattattactagagtggtgctagacccaaatggattatcacaacgtttacaatggacagataggacacagaattggga |
105 |
Q |
| |
|
|||||||||| || ||||||||||||| ||||||| |||||||||| ||| ||||| ||||||||||| |||||| ||||||||||||||| |||||| |
|
|
| T |
5503512 |
aatatgaaactttaaacagttcaattaatactagattggtgctagatccatatggaacttcacaacgttttcaatggtcagataggacacagatttggga |
5503413 |
T |
|
| Q |
106 |
agctttagcgaatcgtcctgcagaccagtgtgatgcttatgccttttgtggtatcaattctaactgcaatattaatgactttccaatatgtgaatgtttg |
205 |
Q |
| |
|
||| || || |||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| | || |||||||||||||||||| || |
|
|
| T |
5503412 |
ggctatatatgctcttcctgcagaccagtgtgatgcttatgacttgtgtggtaacaattctaactgcaatggtgatatctttccaatatgtgaatgctta |
5503313 |
T |
|
| Q |
206 |
gaaggtttcatgccaaaat |
224 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
5503312 |
gaaggtttcgtgccaaaat |
5503294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 5848457 - 5848676
Alignment:
| Q |
6 |
aatatgaaaccttgaacagttcaattattactagagtggtgctagacccaaatggattatcacaacgtttacaatggacagataggacacagaattggga |
105 |
Q |
| |
|
|||||||||| || ||||||| ||||||||||||||| |||||| | ||| ||||| ||||||||| | |||||| | ||| |||||| |||||||| |
|
|
| T |
5848457 |
aatatgaaactttaaacagtttaattattactagagttgtgctaaatccatatggaacttcacaacgtcttcaatggtcggatcagacacaaaattggga |
5848556 |
T |
|
| Q |
106 |
agctttagcgaatcgtcctgcagaccagtgtgatgcttatgccttttgtggtatcaattctaactgcaatattaatgactttccaatatgtgaatgtttg |
205 |
Q |
| |
|
| | | ||| |||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
5848557 |
gattattactaatgctcctgcagaccagtgtgatgattatgccttgtgcggtatcaactctaactgcaatattaataactttccaatatgtgaatgcttg |
5848656 |
T |
|
| Q |
206 |
gaaggtttcatgccaaaatt |
225 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5848657 |
gaaggtttcatgccaaaatt |
5848676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 5853758 - 5853977
Alignment:
| Q |
6 |
aatatgaaaccttgaacagttcaattattactagagtggtgctagacccaaatggattatcacaacgtttacaatggacagataggacacagaattggga |
105 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| ||| |||||| ||| ||| ||||||||| | | |||| |||||| |||||| | |||||| |
|
|
| T |
5853758 |
aatatgaaactatgaaccgttcaattattactagaatggagctagatccatccggaaattcacaacgtcttctatggtcagatacgacacaaatttggga |
5853857 |
T |
|
| Q |
106 |
agctttagcgaatcgtcctgcagaccagtgtgatgcttatgccttttgtggtatcaattctaactgcaatattaatgactttccaatatgtgaatgtttg |
205 |
Q |
| |
|
||| || | ||||||||||||||| |||||| ||||||||| || |||||||| ||||||||||||| |||| ||||||||| ||||||||| ||| |
|
|
| T |
5853858 |
ggctatatcttctcgtcctgcagaccaatgtgataattatgccttgtgcggtatcaactctaactgcaatagtaataactttccaacatgtgaatgcttg |
5853957 |
T |
|
| Q |
206 |
gaaggtttcatgccaaaatt |
225 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5853958 |
gaaggtttcatgccaaaatt |
5853977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 5827728 - 5827947
Alignment:
| Q |
6 |
aatatgaaaccttgaacagttcaattattactagagtggtgctagacccaaatggattatcacaacgtttacaatggacagataggacacagaattggga |
105 |
Q |
| |
|
|||||| ||| || ||||||||||| ||||||||| | |||||||| ||| ||||| | || | ||||| |||| ||||| || ||| ||||||| |
|
|
| T |
5827728 |
aatatgcaacgtttaacagttcaatgattactagatttgtgctagatccatatggaattccaaaccgttttatatggtcagatcagaaacaaaattgggt |
5827827 |
T |
|
| Q |
106 |
agctttagcgaatcgtcctgcagaccagtgtgatgcttatgccttttgtggtatcaattctaactgcaatattaatgactttccaatatgtgaatgtttg |
205 |
Q |
| |
|
||| || | | |||| ||| |||||||||||| | ||||||||||||| |||| || || || |||||||||||||| |||||| |||||||||| ||| |
|
|
| T |
5827828 |
ggctatatctagtcgtgctgtagaccagtgtgaagattatgccttttgtagtattaactcaaattgcaatattaatgattttccagtatgtgaatgcttg |
5827927 |
T |
|
| Q |
206 |
gaaggtttcatgccaaaatt |
225 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5827928 |
gaaggtttcatgccaaaatt |
5827947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 225
Target Start/End: Complemental strand, 20344119 - 20343923
Alignment:
| Q |
29 |
attattactagagtggtgctagacccaaatggattatcacaacgtttacaatggacagataggacacagaattgggaagctttagcgaatcgtcctgcag |
128 |
Q |
| |
|
|||||||||||| | |||||||| || ||||| |||||||||| |||| | ||| ||||||| |||||||| ||| ||| | ||||||| || |
|
|
| T |
20344119 |
attattactagatttgtgctagatacatatggaactccacaacgttttatatggtcggattggacacaaaattgggaggctacagctactcgtcctatag |
20344020 |
T |
|
| Q |
129 |
accagtgtgatgcttatgccttttgtggtatcaattctaactgcaatattaatgactttccaatatgtgaatgtttggaaggtttcatgccaaaatt |
225 |
Q |
| |
|
|||||||||| | ||||||| |||||| ||||| |||||||||||||||||||| | |||||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
20344019 |
accagtgtgaagagtatgcctgttgtgggatcaactctaactgcaatattaatgaatctccaatttgtgaatgcttggaaggtttcacgccaaaatt |
20343923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 65 - 225
Target Start/End: Original strand, 5802119 - 5802279
Alignment:
| Q |
65 |
tcacaacgtttacaatggacagataggacacagaattgggaagctttagcgaatcgtcctgcagaccagtgtgatgcttatgccttttgtggtatcaatt |
164 |
Q |
| |
|
||||||||||| | |||| ||||||| ||||| | |||| | ||| || | |||||| |||||||||||||||| |||| |||| || |||||||| | |
|
|
| T |
5802119 |
tcacaacgttttctatggtcagatagcacacaaatttggaaggctatatcttctcgtccggcagaccagtgtgatgattattccttatgcggtatcaact |
5802218 |
T |
|
| Q |
165 |
ctaactgcaatattaatgactttccaatatgtgaatgtttggaaggtttcatgccaaaatt |
225 |
Q |
| |
|
| || |||||||||||||| |||||| |||||||||| |||||||||||||||| ||||| |
|
|
| T |
5802219 |
caaattgcaatattaatgaatttccagtatgtgaatgcgtggaaggtttcatgccgaaatt |
5802279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 25808847 - 25809071
Alignment:
| Q |
1 |
ttacgaatatgaaaccttgaacagttcaattattactagagtggtgctagacccaaatggattatcacaacgtttacaatggacagataggacacagaat |
100 |
Q |
| |
|
|||| |||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||| ||||||| || |
|
|
| T |
25808847 |
ttaccaatatgaaactttgagcagttcaattattactagagtcgtgctagacccaaatggaatatcacaacgcttacaatggacagataagacacaggat |
25808946 |
T |
|
| Q |
101 |
tgggaagctttagcgaatcgtcctgcagaccagtgtgatgcttatgccttttgtggtatcaattctaactgcaatattaatgactttccaatatgtgaat |
200 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
25808947 |
tgggcggctttagccaaacgtcctgcagaccagtgtgatgcttataccttttgtggtatcaattctaactgcaatatgaatgactttccaatatgtgtat |
25809046 |
T |
|
| Q |
201 |
gtttggaaggtttcatgccaaaatt |
225 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
25809047 |
gtttggaaggtttcaggccaaaatt |
25809071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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