View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11708_low_30 (Length: 233)
Name: NF11708_low_30
Description: NF11708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11708_low_30 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 5456585 - 5456409
Alignment:
| Q |
1 |
ccacacaaacacaatggagaactataagctcctaatggtaattgtcaatttatccgccaaagtttgcaacattgatactcttggtctctccctttccttt |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
5456585 |
ccacacaaacacaatgaagaactataagctcctaatggtaattgtcaatttatccaccaaagtttgcaacattgatacttttagtctctccctttccttt |
5456486 |
T |
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| Q |
101 |
tcaattccatcatccgtattacacgtaacactagaaggtcttgacttgaaaacgaatcagtcaacattttgtcaaca |
177 |
Q |
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| T |
5456485 |
tcaattccattatccgtattacacgtaacactagaaggtcttgacttgaaaacgaatcagtcaacattgtgtcaaca |
5456409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 63 - 165
Target Start/End: Complemental strand, 5447973 - 5447871
Alignment:
| Q |
63 |
tttgcaacattgatactcttggtctctccctttccttttcaattccatcatccgtattacacgtaacactagaaggtcttgacttgaaaacgaatcagtc |
162 |
Q |
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| T |
5447973 |
tttgcaacattgatagttttggtccctccttttccctttcatttcagtcatccgtattacacgtaacactagaaggtcttgacttgaaaacgaatcagtc |
5447874 |
T |
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| Q |
163 |
aac |
165 |
Q |
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||| |
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| T |
5447873 |
aac |
5447871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 5455705 - 5455661
Alignment:
| Q |
189 |
aaggagagtgttcatataagatagatacacatggttttccccaac |
233 |
Q |
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| T |
5455705 |
aaggtgagtgttcatataagatagatacacatggttttccccaac |
5455661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 5503690 - 5503651
Alignment:
| Q |
194 |
gagtgttcatataagatagatacacatggttttccccaac |
233 |
Q |
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| T |
5503690 |
gagtgttcatataagatagatacacatggttttcctcaac |
5503651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5448021 - 5447971
Alignment:
| Q |
1 |
ccacacaaacacaatggagaactataagctcctaatggtaattgtcaattt |
51 |
Q |
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| T |
5448021 |
ccacacaaacacaatggagaaccataaggtgctgatggtaattgtcaattt |
5447971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 5495665 - 5495632
Alignment:
| Q |
3 |
acacaaacacaatggagaactataagctcctaat |
36 |
Q |
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| T |
5495665 |
acacaaacacaatggagaactataagctcctaat |
5495632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 5447143 - 5447099
Alignment:
| Q |
189 |
aaggagagtgttcatataagatagatacacatggttttccccaac |
233 |
Q |
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|||| |||||||| |||||||||||||||||||||||||| |||| |
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| T |
5447143 |
aaggtgagtgttcgtataagatagatacacatggttttcctcaac |
5447099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 5485461 - 5485417
Alignment:
| Q |
189 |
aaggagagtgttcatataagatagatacacatggttttccccaac |
233 |
Q |
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|||| |||||||||||||||||||||| |||||||||||| |||| |
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| T |
5485461 |
aaggtgagtgttcatataagatagatatacatggttttcctcaac |
5485417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 5490882 - 5490838
Alignment:
| Q |
189 |
aaggagagtgttcatataagatagatacacatggttttccccaac |
233 |
Q |
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|||| |||||||| |||||||||||||||||||||||||| |||| |
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| T |
5490882 |
aaggtgagtgttcgtataagatagatacacatggttttcctcaac |
5490838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 25808669 - 25808713
Alignment:
| Q |
189 |
aaggagagtgttcatataagatagatacacatggttttccccaac |
233 |
Q |
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|||| |||||||| |||||||||||||||||||||||||| |||| |
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| T |
25808669 |
aaggtgagtgttcgtataagatagatacacatggttttcctcaac |
25808713 |
T |
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