View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11708_low_4 (Length: 714)
Name: NF11708_low_4
Description: NF11708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11708_low_4 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 498; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 142 - 714
Target Start/End: Complemental strand, 4669759 - 4669190
Alignment:
| Q |
142 |
aaaggaacaattcaaggtgaagtttccctgctactaaaaattgaacaaatgctcgctaaattctaaattgttgtactagaagccattttgcagggattgc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
4669759 |
aaaggaacaattcaaggtgaagtttcccttctactaaaaattgaacaaatgctcgctaaattctaaattgttgtaatagaaaccattttgcagggattgc |
4669660 |
T |
|
| Q |
242 |
caccaatgcgatatccaacatgttattaaatttatctttggatctattcccaataaaccaacttacatgctattaaatttatccttggatctaatcccaa |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4669659 |
caccaatgcgatatccaacatgttattaaatttatctttggatctattcccaataaaccaacttacatgttattaaatttatccttggatctaatcccaa |
4669560 |
T |
|
| Q |
342 |
caaaccaacttacggaatgagtccacaagagtatgttgaaatccaacgtcgagttaaagaattgttgaagaacggattaatataggaaagtactaagctt |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4669559 |
caaaccaacttacggaatgagtccacaagagcatgttgaaatccaacgtcgagttaaagaattgttgaagaacggattaatataggaaagtactaagctt |
4669460 |
T |
|
| Q |
442 |
caagtcaacagtgttaggcatcctcatatagatggactaaccgaagttgttgacatgatttttagaaacctaattcaaagatttatgagtaattgtgaca |
541 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4669459 |
caagtcaatagtgttaggcatcctcatatagatggactaaccgaagttgttgacatgatttttggaaacctaattcaaagatttatgagtaattgtgaca |
4669360 |
T |
|
| Q |
542 |
agcacatgataaggcaacaaatctttaaaattgaaaatttagcatggatgcatctatggaagaagnnnnnnncggtatccaaatcaaccaagtttcaggt |
641 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4669359 |
agcac---ataaggcaataaatctttaaaattgaaaatttagcatggatgcatctatggaagaagaaaaaaacggtatccaaatcaaccaagtttcaggt |
4669263 |
T |
|
| Q |
642 |
tttatccaagagttgatggccccttcaaaatagtgcagaaaatcattaataatgcttacaaggcataaatgtc |
714 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4669262 |
tttatccaagagttgatgggcccttcaaaatagtgcagaaaatcattaacaatgcttacaaggcataaatgtc |
4669190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 4669913 - 4669783
Alignment:
| Q |
18 |
agacaatataattgttgtgccttgtatgacggttatgccaatgcatactcatttgttaaagatgtagtaaaagtcaacctaattatgttatcagattatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4669913 |
agacaatataattgttgtgccttgtatgacggttatgccaatgcatactcatttgttaaagatgtagtaaaagtcaacctaattatgttatcagattatc |
4669814 |
T |
|
| Q |
118 |
agcaaatgaaatcaatgtaagaaaaaaggaa |
148 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |
|
|
| T |
4669813 |
agcaaatgaaatcgatgtaagaaaaaaggaa |
4669783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 647 - 704
Target Start/End: Complemental strand, 2791049 - 2790992
Alignment:
| Q |
647 |
ccaagagttgatggccccttcaaaatagtgcagaaaatcattaataatgcttacaagg |
704 |
Q |
| |
|
||||||| |||||| |||||||||||||| || ||||||| | | ||||||||||||| |
|
|
| T |
2791049 |
ccaagagctgatggtcccttcaaaatagttcaaaaaatcaatgacaatgcttacaagg |
2790992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 647 - 704
Target Start/End: Complemental strand, 14472031 - 14471974
Alignment:
| Q |
647 |
ccaagagttgatggccccttcaaaatagtgcagaaaatcattaataatgcttacaagg |
704 |
Q |
| |
|
||||||| |||||| |||||||| ||||| |||||||||| | | ||||||||||||| |
|
|
| T |
14472031 |
ccaagagctgatggtcccttcaagatagtacagaaaatcaatgacaatgcttacaagg |
14471974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 356 - 432
Target Start/End: Complemental strand, 27008 - 26932
Alignment:
| Q |
356 |
gaatgagtccacaagagtatgttgaaatccaacgtcgagttaaagaattgttgaagaacggattaatataggaaagt |
432 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||||| |||| |||||||| ||||||| ||| ||||| |||||||| |
|
|
| T |
27008 |
gaatgagtccacaagagcatgctgaaatcacacgtcaagttgaagaattgctgaagaaaggactaatacaggaaagt |
26932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 356 - 432
Target Start/End: Original strand, 89081 - 89157
Alignment:
| Q |
356 |
gaatgagtccacaagagtatgttgaaatccaacgtcgagttaaagaattgttgaagaacggattaatataggaaagt |
432 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||||| |||| |||||||| ||||||| ||| ||||| |||||||| |
|
|
| T |
89081 |
gaatgagtccacaagagcatgctgaaatcacacgtcaagttgaagaattgctgaagaaaggactaatacaggaaagt |
89157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 356 - 432
Target Start/End: Original strand, 11709572 - 11709648
Alignment:
| Q |
356 |
gaatgagtccacaagagtatgttgaaatccaacgtcgagttaaagaattgttgaagaacggattaatataggaaagt |
432 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||||| |||| |||||||| ||||||| ||| ||||| |||||||| |
|
|
| T |
11709572 |
gaatgagtccacaagagcatgctgaaatcacacgtcaagttgaagaattgctgaagaaaggactaatacaggaaagt |
11709648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 356 - 432
Target Start/End: Original strand, 11713935 - 11714011
Alignment:
| Q |
356 |
gaatgagtccacaagagtatgttgaaatccaacgtcgagttaaagaattgttgaagaacggattaatataggaaagt |
432 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||||| |||| |||||||| ||||||| ||| ||||| |||||||| |
|
|
| T |
11713935 |
gaatgagtccacaagagcatgctgaaatcacacgtcaagttgaagaattgctgaagaaaggactaatacaggaaagt |
11714011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 647 - 704
Target Start/End: Original strand, 11716208 - 11716265
Alignment:
| Q |
647 |
ccaagagttgatggccccttcaaaatagtgcagaaaatcattaataatgcttacaagg |
704 |
Q |
| |
|
||||||| |||||| |||||||||||||| || ||||||| | | ||||||||||||| |
|
|
| T |
11716208 |
ccaagagctgatggtcccttcaaaatagttcaaaaaatcaatgacaatgcttacaagg |
11716265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 356 - 432
Target Start/End: Complemental strand, 5380826 - 5380750
Alignment:
| Q |
356 |
gaatgagtccacaagagtatgttgaaatccaacgtcgagttaaagaattgttgaagaacggattaatataggaaagt |
432 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||||| |||| |||||||| ||||||| ||| ||||| |||||||| |
|
|
| T |
5380826 |
gaatgagtccacaagagcatgctgaaatcacacgtcaagttgaagaattgctgaagaaaggactaatacaggaaagt |
5380750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 357 - 432
Target Start/End: Complemental strand, 13720592 - 13720517
Alignment:
| Q |
357 |
aatgagtccacaagagtatgttgaaatccaacgtcgagttaaagaattgttgaagaacggattaatataggaaagt |
432 |
Q |
| |
|
|||||||||||||||| ||| ||||||| ||||| |||| |||||||| ||||||| ||| ||||| |||||||| |
|
|
| T |
13720592 |
aatgagtccacaagagcatgctgaaatcacacgtcaagttgaagaattgctgaagaaaggactaatacaggaaagt |
13720517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 356 - 432
Target Start/End: Complemental strand, 16775253 - 16775177
Alignment:
| Q |
356 |
gaatgagtccacaagagtatgttgaaatccaacgtcgagttaaagaattgttgaagaacggattaatataggaaagt |
432 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||||| |||| |||||||| |||| || ||| ||||| |||||||| |
|
|
| T |
16775253 |
gaatgagtccacaagagcatgctgaaatcacacgtcaagttgaagaattgctgaaaaaaggactaatacaggaaagt |
16775177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University