View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11708_low_5 (Length: 676)

Name: NF11708_low_5
Description: NF11708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11708_low_5
NF11708_low_5
[»] chr1 (1 HSPs)
chr1 (1-665)||(8457612-8458276)
[»] chr8 (2 HSPs)
chr8 (21-451)||(6827278-6827703)
chr8 (553-665)||(6827166-6827279)
[»] chr6 (2 HSPs)
chr6 (21-451)||(9822441-9822866)
chr6 (553-665)||(9822865-9822978)
[»] chr3 (2 HSPs)
chr3 (3-308)||(27964065-27964365)
chr3 (602-665)||(27963980-27964043)
[»] chr7 (1 HSPs)
chr7 (558-665)||(25802596-25802704)
[»] chr2 (3 HSPs)
chr2 (565-661)||(18361166-18361263)
chr2 (372-450)||(18361265-18361345)
chr2 (227-290)||(18361362-18361425)


Alignment Details
Target: chr1 (Bit Score: 633; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 1 - 665
Target Start/End: Original strand, 8457612 - 8458276
Alignment:
Q  1 tagaatattgagggttttcctttggcttcttgctttatatattcaggagttatatatagttttatacctcaattctgtcattggtagatattcaccaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8457612 tagaatattgagggttttcctttggcttcttgctttatatattcaggagttatatatagttttatacctcaattctgtcatttgtagatattcaccaaaa 8457711  T
Q  101 tatgtgaaagaatatattgaaggagcaaagccactgttatctgttggggagtattgggatacatgcaactacaacggttctactttggactataaccaag 200  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8457712 tatgtgaaagaatatattgaaggaccaaagccaatgttatctgttggggagtattgggatacatgcaactacaacggttctactttggactataaccaag 8457811  T
Q  201 gtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctttttcattttaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8457812 gtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctttttcattttaca 8457911  T
Q  301 ctcagctctcttattttttactctttgcagatagtcatagacaacgaataatcaattggattgatggcactggacagctttcaactgcatttgacttcac 400  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8457912 ctcagctctcttattttttactctttgcagataaccatagacaacgaataatcaattggattgatggcactggacagctttcaactgcatttgacttcac 8458011  T
Q  401 aacaaagggaattctccaggtacccaacattttgtcctaagtatgttaaatgaaggtttgaaaactaagcattgcagttagatcttacccttttttgcta 500  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8458012 aacgaagggaattctccaggtacccaacattttgtcctaagtatgttaaatgaaggtttgaaaactaagcattgcagttagatcttacccttttttgcta 8458111  T
Q  501 gtcaataagttaatttctttgtacaaactttgatgcgcatgcagtctcatgtatatcaggtattgaattcattttttcatgttaccattatttgtaggaa 600  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8458112 gtcaataagttaatttctttgtacaaactttgatacgcatgcagtttcatgtatatcaggtattgaattcattttttcatgttaccattatttgtaggaa 8458211  T
Q  601 gctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatg 665  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8458212 gctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatg 8458276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 21 - 451
Target Start/End: Complemental strand, 6827703 - 6827278
Alignment:
Q  21 tttggcttcttgctttatatattcaggagttatatatagttttatac--ctcaattctgtcattggtagatattcaccaaaatatgtgaaagaatatatt 118  Q
    ||||||||||| |||||||||||||||||     |||||||||| ||  ||||||||||||||| |||| ||||||||||||||||| ||||| ||||||    
T  6827703 tttggcttcttactttatatattcaggag----ctatagttttacacctctcaattctgtcatttgtagctattcaccaaaatatgttaaagactatatt 6827608  T
Q  119 gaaggagcaaagccactgttatctgttggggagtattgggatacatgcaactacaacggttctactttggactataaccaaggtatactgcttaaaattc 218  Q
    ||||||||| | |||||||||||||| |||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  6827607 gaaggagcacaaccactgttatctgtcggggagtatttggatgtttgcaactacaacggttctactttggactataaccaaggta---tgcttaaaattc 6827511  T
Q  219 taattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctttttcattttacactcagctctcttattttt 318  Q
    | |||||| |||||||||||||||||||||||||||||||| ||||||||||  |||||||||| ||||||| |||| |||||| ||||| |||||||||    
T  6827510 tcattcatgaaataaatgaatactttttggttactaagtatgtgaatacattaccctttcaatacttcttttgcattgtacacttagctcacttattttt 6827411  T
Q  319 tactctttgcagatagtcatagacaacgaataatcaattggattgatggcactggacagctttcaactgcatttgacttcacaacaaagggaattctcca 418  Q
    |||| ||||||||||| ||||| |||||||||||||| ||||||||||||| |||||| |||||||||| ||||||||||||||| ||||||||||||||    
T  6827410 tactttttgcagatagccataggcaacgaataatcaaatggattgatggcagtggacatctttcaactggatttgacttcacaaccaagggaattctcca 6827311  T
Q  419 ggtacccaacattttgtcctaagtatgttaaat 451  Q
    |||||| ||||||||||||||||||||||||||    
T  6827310 ggtacctaacattttgtcctaagtatgttaaat 6827278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 553 - 665
Target Start/End: Complemental strand, 6827279 - 6827166
Alignment:
Q  553 atatcaggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacct 651  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  6827279 atatcaggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattctggcgtctgcgtgatgctcaagggaagccacct 6827180  T
Q  652 ggtgtgattggatg 665  Q
    ||||||||||||||    
T  6827179 ggtgtgattggatg 6827166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 21 - 451
Target Start/End: Original strand, 9822441 - 9822866
Alignment:
Q  21 tttggcttcttgctttatatattcaggagttatatatagttttatac--ctcaattctgtcattggtagatattcaccaaaatatgtgaaagaatatatt 118  Q
    ||||||||||| |||||||||||||||||     |||||||||| ||  ||||||||||||||| |||| ||||||||||||||||| ||||| ||||||    
T  9822441 tttggcttcttactttatatattcaggag----ctatagttttacacctctcaattctgtcatttgtagctattcaccaaaatatgttaaagactatatt 9822536  T
Q  119 gaaggagcaaagccactgttatctgttggggagtattgggatacatgcaactacaacggttctactttggactataaccaaggtatactgcttaaaattc 218  Q
    ||||||||| | |||||||||||||| |||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  9822537 gaaggagcacaaccactgttatctgtcggggagtatttggatgtttgcaactacaacggttctactttggactataaccaaggta---tgcttaaaattc 9822633  T
Q  219 taattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctttttcattttacactcagctctcttattttt 318  Q
    | |||||| |||||||||||||||||||||||||||||||| ||||||||||  |||||||||| ||||||| |||| |||||| ||||| |||||||||    
T  9822634 tcattcatgaaataaatgaatactttttggttactaagtatgtgaatacattaccctttcaatacttcttttgcattgtacacttagctcacttattttt 9822733  T
Q  319 tactctttgcagatagtcatagacaacgaataatcaattggattgatggcactggacagctttcaactgcatttgacttcacaacaaagggaattctcca 418  Q
    |||| ||||||||||| ||||| |||||||||||||| ||||||||||||| |||||| |||||||||| ||||||||||||||| ||||||||||||||    
T  9822734 tactttttgcagatagccataggcaacgaataatcaaatggattgatggcagtggacatctttcaactggatttgacttcacaaccaagggaattctcca 9822833  T
Q  419 ggtacccaacattttgtcctaagtatgttaaat 451  Q
    |||||| ||||||||||||||||||||||||||    
T  9822834 ggtacctaacattttgtcctaagtatgttaaat 9822866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 553 - 665
Target Start/End: Original strand, 9822865 - 9822978
Alignment:
Q  553 atatcaggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacct 651  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  9822865 atatcaggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattatggcgtctgcgtgatgctcaagggaagccacct 9822964  T
Q  652 ggtgtgattggatg 665  Q
    ||||||||||||||    
T  9822965 ggtgtgattggatg 9822978  T

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Target: chr3 (Bit Score: 155; Significance: 6e-82; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 3 - 308
Target Start/End: Complemental strand, 27964365 - 27964065
Alignment:
Q  3 gaatattgagggttttccttt-ggcttcttgctttatatattcaggagttatatatagttttatacctc--aattctgtcattggtagatattcaccaaa 99  Q
    |||||||||  |||||||||| |||||||| ||||||||||||||||| ||||     |||||||||||  |||||||||||| |||| |||||||| ||    
T  27964365 gaatattgattgttttccttttggcttcttactttatatattcaggagctataa----ttttatacctctcaattctgtcatttgtagctattcacctaa 27964270  T
Q  100 atatgtgaaagaatatattgaaggagcaaagccactgttatctgttggggagtattgggatacatgcaactacaacggttctactttggactataaccaa 199  Q
    |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| ||||   ||||||||||||||||||||||||||||||||||||    
T  27964269 atatgttaaagagtatattgaaggagcaaagccactgttatctgtcggggagtatttggatgtttgcaactacaacggttctactttggactataaccaa 27964170  T
Q  200 ggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctttttcattttac 299  Q
    ||||   ||||||||||||| ||||||  ||||||||||||||||||||||||||||||| ||||||||||  |||||||||| ||||||| |||| |||    
T  27964169 ggta---tgcttaaaattctcattcat-gaataaatgaatactttttggttactaagtatgtgaatacattaccctttcaatacttcttttgcattgtac 27964074  T
Q  300 actcagctc 308  Q
    ||| |||||    
T  27964073 acttagctc 27964065  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 602 - 665
Target Start/End: Complemental strand, 27964043 - 27963980
Alignment:
Q  602 ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatg 665  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27964043 ctgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatg 27963980  T

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Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 558 - 665
Target Start/End: Complemental strand, 25802704 - 25802596
Alignment:
Q  558 aggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgt 656  Q
    |||||||||||||||||| ||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25802704 aggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgt 25802605  T
Q  657 gattggatg 665  Q
    |||||||||    
T  25802604 gattggatg 25802596  T

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Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 565 - 661
Target Start/End: Complemental strand, 18361263 - 18361166
Alignment:
Q  565 gaattcattttttcatgttaccattatttgtaggaagc-tgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattg 661  Q
    ||||||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18361263 gaattcattttctcatgttaccattatttgtaggaatcatgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattg 18361166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 372 - 450
Target Start/End: Complemental strand, 18361345 - 18361265
Alignment:
Q  372 ggacagctttcaactgcatttgacttcacaacaaagggaat--tctccaggtacccaacattttgtcctaagtatgttaaa 450  Q
    ||||| ||||||||||||| |||||||||| | ||||||||  |||||||||||||| ||||||||| |||||||||||||    
T  18361345 ggacaactttcaactgcatatgacttcacagccaagggaatgatctccaggtacccagcattttgtcttaagtatgttaaa 18361265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 18361425 - 18361362
Alignment:
Q  227 caaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctttt 290  Q
    |||||||||||||||||||||||||||||| || ||||||||||  |||||||||| |||||||    
T  18361425 caaataaatgaatactttttggttactaagcatgtgaatacattaccctttcaatacttctttt 18361362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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