View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11709_high_13 (Length: 236)
Name: NF11709_high_13
Description: NF11709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11709_high_13 |
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| [»] scaffold1019 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 15803625 - 15803397
Alignment:
| Q |
1 |
gttcctcaaaaacctttcaaatgaagtgcatttattggaatgttagaggtttagctaacaacccctcaaggttagcactaaaaaatcttattacacaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15803625 |
gttcctcaaaaacctttcaaatgaagtgcatttattggaatgctagaggtttagctaacaacccctcaaggttagcactaaaaaatcttattacacaata |
15803526 |
T |
|
| Q |
101 |
tcaccctgatttcatctttatctctgaaccatggatggattttgtcaatttccctagaagatggttagtgaacttgaacctgaaactatttgcagttaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
15803525 |
tcaccctgatttcatctttatctctgaaccatggatggattttgacaaattccctagaagatggttagtgaactggaacctaaaactatttgcagttaac |
15803426 |
T |
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| Q |
201 |
tctagaaacaatctctcccctaatctctg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
15803425 |
tctagaaacaatctctcccctaatctctg |
15803397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 23681186 - 23681307
Alignment:
| Q |
13 |
cctttcaaatgaagtgcatttattggaatgttagaggtttagctaacaacccctcaaggttagcactaaaaaatcttattacacaatatcaccctgattt |
112 |
Q |
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||||||||||||| ||||| ||||||||| |||| |||||||||||| ||| ||||||||||| || ||||| | ||| |||| || | ||| |||| |
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| T |
23681186 |
cctttcaaatgaaatgcatatattggaatattaggggtttagctaactccccgtcaaggttagctctccaaaatttaattttacaacataaacctcattt |
23681285 |
T |
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| Q |
113 |
catctttatctctgaaccatgg |
134 |
Q |
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| T |
23681286 |
tatctttatttccgaaccatgg |
23681307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 23853625 - 23853504
Alignment:
| Q |
13 |
cctttcaaatgaagtgcatttattggaatgttagaggtttagctaacaacccctcaaggttagcactaaaaaatcttattacacaatatcaccctgattt |
112 |
Q |
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||||||||||||| ||||| ||||||||| |||| |||||||||||| ||| ||||||||||| || ||||| | ||| |||| || | ||| |||| |
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| T |
23853625 |
cctttcaaatgaaatgcatatattggaatattaggggtttagctaactccccgtcaaggttagctctccaaaatttaattttacaacataaacctcattt |
23853526 |
T |
|
| Q |
113 |
catctttatctctgaaccatgg |
134 |
Q |
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|||||||| || ||||||||| |
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| T |
23853525 |
tatctttatttccgaaccatgg |
23853504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 17631900 - 17631830
Alignment:
| Q |
6 |
tcaaaaacctttcaaatgaagtgcatttattggaatgttagaggtttagctaacaacccctcaaggttagc |
76 |
Q |
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| T |
17631900 |
tcaaaaacctttcaaatgaagtgtttgttctggaatgttaggggtatagctaatcacccctcaagattagc |
17631830 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 12113947 - 12114029
Alignment:
| Q |
13 |
cctttcaaatgaagtgcatttattggaatgttagaggtttagctaacaacccctcaaggttagcactaaaaaatcttattaca |
95 |
Q |
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||||||||||||||||| | |||||||| |||| || |||||||| || |||||||||||||||||||||| ||||||| |
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| T |
12113947 |
cctttcaaatgaagtgcttgtattggaacattagggggatagctaactctccatcaaggttagcactaaaaaatcatattaca |
12114029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 14779029 - 14778908
Alignment:
| Q |
13 |
cctttcaaatgaagtgcatttattggaatgttagaggtttagctaacaacccctcaaggttagcactaaaaaatcttattacacaatatcaccctgattt |
112 |
Q |
| |
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||||||||||||| ||||| ||||||||| | || |||||||||||| ||| ||||||||||| || ||||| | ||| |||| || | ||| |||| |
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| T |
14779029 |
cctttcaaatgaaatgcatatattggaatatcaggggtttagctaactccccgtcaaggttagctctccaaaatttaattttacaacataaacctcattt |
14778930 |
T |
|
| Q |
113 |
catctttatctctgaaccatgg |
134 |
Q |
| |
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|||||||| || ||||||||| |
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| T |
14778929 |
tatctttatttccgaaccatgg |
14778908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1019 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1019
Description:
Target: scaffold1019; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 141
Target Start/End: Complemental strand, 2558 - 2453
Alignment:
| Q |
36 |
tggaatgttagaggtttagctaacaacccctcaaggttagcactaaaaaatcttattacacaatatcaccctgatttcatctttatctctgaaccatgga |
135 |
Q |
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||||||| |||||| |||||||| | ||| ||||| |||||||||||||| |||||| |||| || | || || || | |||||||||||||| |||| |
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| T |
2558 |
tggaatgctagagggttagctaataccccatcaagattagcactaaaaaaccttattttacaacataatcccgactttgtttttatctctgaaccttgga |
2459 |
T |
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| Q |
136 |
tggatt |
141 |
Q |
| |
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|||||| |
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| T |
2458 |
tggatt |
2453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 32018387 - 32018457
Alignment:
| Q |
6 |
tcaaaaacctttcaaatgaagtgcatttattggaatgttagaggtttagctaacaacccctcaaggttagc |
76 |
Q |
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||||||||||||||||||||||| | | ||||||||||| ||| ||||||| |||||||||| ||||| |
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| T |
32018387 |
tcaaaaacctttcaaatgaagtgtttgttctggaatgttaggggtatagctaatcacccctcaagattagc |
32018457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 15090935 - 15090887
Alignment:
| Q |
10 |
aaacctttcaaatgaagtgcatttattggaatgttagaggtttagctaa |
58 |
Q |
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|||||||||| ||||||||| |||| |||||| | |||||||||||||| |
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| T |
15090935 |
aaacctttcagatgaagtgcttttactggaatttaagaggtttagctaa |
15090887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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