View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11709_high_2 (Length: 710)

Name: NF11709_high_2
Description: NF11709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11709_high_2
NF11709_high_2
[»] chr8 (15 HSPs)
chr8 (8-148)||(43658909-43659049)
chr8 (8-141)||(38640642-38640775)
chr8 (50-148)||(43654317-43654415)
chr8 (651-710)||(19723311-19723370)
chr8 (651-710)||(4840140-4840199)
chr8 (653-710)||(27881061-27881118)
chr8 (653-710)||(28021242-28021299)
chr8 (653-710)||(32296712-32296769)
chr8 (652-710)||(11404002-11404060)
chr8 (669-710)||(17095568-17095609)
chr8 (653-701)||(29767190-29767238)
chr8 (666-710)||(24475069-24475113)
chr8 (654-710)||(28739634-28739690)
chr8 (651-710)||(22711509-22711568)
chr8 (680-710)||(21355057-21355087)
[»] chr7 (18 HSPs)
chr7 (8-139)||(41455372-41455503)
chr7 (8-139)||(41451688-41451820)
chr7 (8-139)||(32355239-32355370)
chr7 (651-710)||(16059426-16059485)
chr7 (651-710)||(35109691-35109750)
chr7 (651-710)||(38265310-38265369)
chr7 (651-710)||(41151172-41151231)
chr7 (651-710)||(12472121-12472180)
chr7 (651-710)||(18117017-18117076)
chr7 (651-710)||(34721834-34721893)
chr7 (651-710)||(21577171-21577230)
chr7 (651-705)||(48176399-48176453)
chr7 (653-710)||(11216771-11216828)
chr7 (651-708)||(45278452-45278509)
chr7 (651-708)||(38405229-38405286)
chr7 (664-708)||(245339-245383)
chr7 (669-710)||(37095283-37095324)
chr7 (652-710)||(23028684-23028742)
[»] chr2 (25 HSPs)
chr2 (7-131)||(8363300-8363424)
chr2 (651-710)||(45137043-45137102)
chr2 (651-710)||(6672866-6672925)
chr2 (651-710)||(25987735-25987794)
chr2 (651-710)||(40156040-40156099)
chr2 (63-140)||(8365593-8365670)
chr2 (652-710)||(21637898-21637956)
chr2 (653-710)||(17136389-17136446)
chr2 (652-708)||(10745307-10745363)
chr2 (8-67)||(33357996-33358055)
chr2 (651-710)||(36836402-36836461)
chr2 (8-142)||(27529086-27529220)
chr2 (651-704)||(7860225-7860278)
chr2 (654-710)||(3200884-3200940)
chr2 (651-710)||(44650393-44650452)
chr2 (652-710)||(26690155-26690213)
chr2 (651-710)||(2357148-2357207)
chr2 (651-710)||(2754124-2754183)
chr2 (651-710)||(5039420-5039479)
chr2 (652-707)||(36380208-36380263)
chr2 (652-705)||(30372758-30372811)
chr2 (673-709)||(558513-558549)
chr2 (13-133)||(40862766-40862886)
chr2 (652-710)||(13047226-13047282)
chr2 (666-705)||(20961496-20961535)
[»] scaffold0067 (1 HSPs)
scaffold0067 (8-139)||(7972-8103)
[»] chr4 (18 HSPs)
chr4 (7-148)||(6799125-6799266)
chr4 (10-147)||(8986594-8986733)
chr4 (10-148)||(8996066-8996206)
chr4 (18-139)||(42528323-42528436)
chr4 (652-709)||(36192542-36192599)
chr4 (651-710)||(8740448-8740507)
chr4 (651-710)||(46494471-46494530)
chr4 (651-710)||(32139164-32139223)
chr4 (651-710)||(39863851-39863910)
chr4 (651-710)||(51066493-51066552)
chr4 (651-708)||(50905748-50905805)
chr4 (651-710)||(51714038-51714097)
chr4 (651-710)||(30970457-30970516)
chr4 (652-709)||(2294784-2294841)
chr4 (64-123)||(6806927-6806985)
chr4 (651-710)||(47627066-47627127)
chr4 (651-703)||(7173665-7173717)
chr4 (662-710)||(50399715-50399763)
[»] chr1 (17 HSPs)
chr1 (8-147)||(13016342-13016481)
chr1 (8-148)||(47323268-47323405)
chr1 (34-148)||(47326868-47326982)
chr1 (651-710)||(30054515-30054574)
chr1 (651-709)||(20014458-20014516)
chr1 (652-710)||(30370133-30370191)
chr1 (651-710)||(4573379-4573438)
chr1 (651-710)||(45324006-45324065)
chr1 (652-710)||(12025182-12025240)
chr1 (652-705)||(21090116-21090169)
chr1 (651-707)||(30850916-30850972)
chr1 (664-710)||(33763327-33763373)
chr1 (663-709)||(44438624-44438670)
chr1 (669-710)||(22024121-22024162)
chr1 (95-138)||(291364-291407)
chr1 (680-710)||(14498152-14498182)
chr1 (651-697)||(15034455-15034501)
[»] chr3 (20 HSPs)
chr3 (8-139)||(28703673-28703804)
chr3 (28-136)||(36611959-36612068)
chr3 (651-710)||(7417798-7417857)
chr3 (651-710)||(8400855-8400914)
chr3 (652-710)||(22855888-22855946)
chr3 (8-57)||(32893797-32893846)
chr3 (76-148)||(32893717-32893789)
chr3 (651-710)||(50823698-50823757)
chr3 (651-710)||(50852103-50852162)
chr3 (651-710)||(35198765-35198824)
chr3 (651-705)||(43334132-43334186)
chr3 (652-710)||(55468000-55468058)
chr3 (651-708)||(34824556-34824613)
chr3 (652-705)||(48078019-48078072)
chr3 (666-710)||(29635883-29635927)
chr3 (662-705)||(52545332-52545375)
chr3 (13-87)||(8878855-8878929)
chr3 (651-709)||(50726071-50726129)
chr3 (651-709)||(50786719-50786777)
chr3 (680-710)||(22371802-22371832)
[»] chr5 (7 HSPs)
chr5 (8-148)||(40254861-40254998)
chr5 (15-139)||(26050014-26050140)
chr5 (15-139)||(26053428-26053554)
chr5 (651-710)||(17064323-17064382)
chr5 (654-709)||(20983077-20983132)
chr5 (651-701)||(37976546-37976596)
chr5 (652-703)||(35237103-35237154)
[»] chr6 (8 HSPs)
chr6 (15-139)||(27074981-27075107)
chr6 (17-139)||(27078346-27078470)
chr6 (651-705)||(14496352-14496406)
chr6 (653-710)||(19686900-19686957)
chr6 (651-710)||(35163823-35163882)
chr6 (651-706)||(14505600-14505655)
chr6 (672-710)||(20685346-20685384)
chr6 (651-710)||(2711807-2711866)
[»] scaffold0021 (1 HSPs)
scaffold0021 (652-710)||(107764-107822)
[»] scaffold0691 (1 HSPs)
scaffold0691 (653-710)||(7042-7099)
[»] scaffold0012 (1 HSPs)
scaffold0012 (18-86)||(206191-206259)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 7e-57; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 43658909 - 43659049
Alignment:
Q  8 gagatgaacctgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctcagattttacgtttcattttctt 107  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||    
T  43658909 gagaagaaccggttgtactctgggggagttgcgcaattctgcggataattccttagtttagtgacattgtcatgcctcagattttacgtttcattttctt 43659008  T
Q  108 gttttgcaggttgtgatccttcagtcatccgcgaacaacaa 148  Q
    ||||||||||||||||||||||||| |||||| ||||||||    
T  43659009 gttttgcaggttgtgatccttcagttatccgcaaacaacaa 43659049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 38640775 - 38640642
Alignment:
Q  8 gagatgaacctgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctcagattttacgtttcattttctt 107  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||| ||||| ||    
T  38640775 gagatgaacctgttgtactctgggggagttgcacaattctgcggataattccttagttcagtgacatagtcacgcctcaggttttacgttttattttatt 38640676  T
Q  108 gttttgcaggttgtgatccttcagtcatccgcga 141  Q
     |||||||||||||||||||||||||||||||||    
T  38640675 attttgcaggttgtgatccttcagtcatccgcga 38640642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 43654317 - 43654415
Alignment:
Q  50 ggataattcctttgttcagtgacattgtcacgcctcagattttacgtttcattttcttgttttgcaggttgtgatccttcagtcatccgcgaacaacaa 148  Q
    |||||||||||| ||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43654317 ggataattccttagttcagtgacattgtcacgcctcatgttttatgtttcattttcttgttttgcaggttgtgatccttcagtcatccgcgaacaacaa 43654415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 651 - 710
Target Start/End: Original strand, 19723311 - 19723370
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19723311 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 19723370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 651 - 710
Target Start/End: Original strand, 4840140 - 4840199
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4840140 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtcattacc 4840199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 653 - 710
Target Start/End: Complemental strand, 27881118 - 27881061
Alignment:
Q  653 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  27881118 gagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaaatacc 27881061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 653 - 710
Target Start/End: Complemental strand, 28021299 - 28021242
Alignment:
Q  653 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  28021299 gagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaaatacc 28021242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 653 - 710
Target Start/End: Complemental strand, 32296769 - 32296712
Alignment:
Q  653 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||    
T  32296769 gagagaacccgggttcaagccctgctagtgcctttgaagggaggtaaatgtaattacc 32296712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 652 - 710
Target Start/End: Original strand, 11404002 - 11404060
Alignment:
Q  652 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||| ||||||||||| |||||||| |||||||||||||||||||||| ||||    
T  11404002 cgagagaacctgggttcgagcctcgctagtgtctttggagggaggtaaatgtaaatacc 11404060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 669 - 710
Target Start/End: Original strand, 17095568 - 17095609
Alignment:
Q  669 gagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17095568 gagccccgctagtgcctttggagggaggtaaatgtaattacc 17095609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 653 - 701
Target Start/End: Original strand, 29767190 - 29767238
Alignment:
Q  653 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaat 701  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  29767190 gagagaacccggggtcgagccccgctagtgcctttgaagggaggtaaat 29767238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 666 - 710
Target Start/End: Complemental strand, 24475113 - 24475069
Alignment:
Q  666 ttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||    
T  24475113 ttcgagctccgctagtgcctttggagggaggtaaatgtaaatacc 24475069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 654 - 710
Target Start/End: Complemental strand, 28739690 - 28739634
Alignment:
Q  654 agagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||| |||||| |||||| |||||||||||||||| | |||||||||| ||||    
T  28739690 agagaacctgggttcaagccccactagtgcctttggaggaaagtaaatgtaaatacc 28739634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 651 - 710
Target Start/End: Original strand, 22711509 - 22711568
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||| |||||| ||| ||  ||| ||||||||||||||||||||||||| ||||    
T  22711509 ccgagagaactcgggtttgagtccaactaatgcctttggagggaggtaaatgtaaatacc 22711568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 680 - 710
Target Start/End: Complemental strand, 21355087 - 21355057
Alignment:
Q  680 gtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||||||||||||||||||||||    
T  21355087 gtgcctttggagggaggtaaatgtaattacc 21355057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 2e-51; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 41455503 - 41455372
Alignment:
Q  8 gagatgaacctgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctcagattttacgtttcattttctt 107  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||    
T  41455503 gagatgaacctgttgtactttgggggagttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctcagattttactttttattttctt 41455404  T
Q  108 gttttgcaggttgtgatccttcagtcatccgc 139  Q
    |||||| ||||| |||||||||||||||||||    
T  41455403 gttttgtaggttatgatccttcagtcatccgc 41455372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 41451820 - 41451688
Alignment:
Q  8 gagatgaacctgttgtactctggggg-agttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctcagattttacgtttcattttct 106  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||| |||||||| |||||||||||  |||||| ||| |||||||    
T  41451820 gagatgaacctgttgtactctggggggagttgcacaattctgcggataattccttagtttagtgacatagtcacgcctcatgttttactttttattttct 41451721  T
Q  107 tgttttgcaggttgtgatccttcagtcatccgc 139  Q
    ||||||||||||| |||||||||||||||||||    
T  41451720 tgttttgcaggttatgatccttcagtcatccgc 41451688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 32355239 - 32355370
Alignment:
Q  8 gagatgaacctgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctcagattttacgtttcattttctt 107  Q
    ||||||||||||||||||||||| | ||||||| ||||||||| |||||| ||| ||||||||| ||||||||||||||| |||||| ||| ||||||||    
T  32355239 gagatgaacctgttgtactctggagaagttgcgtaattctgcgaataatttcttagttcagtgatattgtcacgcctcaggttttactttttattttctt 32355338  T
Q  108 gttttgcaggttgtgatccttcagtcatccgc 139  Q
    |||||||||||| |||||||||||||||||||    
T  32355339 gttttgcaggttatgatccttcagtcatccgc 32355370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 651 - 710
Target Start/End: Complemental strand, 16059485 - 16059426
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16059485 ccgagagaacccgggttcgagccccgctagtgcctttgcagggaggtaaatgtaattacc 16059426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 651 - 710
Target Start/End: Original strand, 35109691 - 35109750
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35109691 ccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaattacc 35109750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 651 - 710
Target Start/End: Complemental strand, 38265369 - 38265310
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38265369 ccgagagaacctgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 38265310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 651 - 710
Target Start/End: Original strand, 41151172 - 41151231
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41151172 ccgagagaacccgggttcgagccccgctagtgtctttggagggaggtaaatgtaattacc 41151231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 651 - 710
Target Start/End: Original strand, 12472121 - 12472180
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  12472121 ccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatataattacc 12472180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 651 - 710
Target Start/End: Complemental strand, 18117076 - 18117017
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  18117076 ccgagagaacccgggttcgagccacgctagtgcctttagagggaggtaaatgtaattacc 18117017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 651 - 710
Target Start/End: Original strand, 34721834 - 34721893
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  34721834 ccgagagaacccggattcaagccccgctagtgcctttggagggaggtaaatgtaattacc 34721893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 651 - 710
Target Start/End: Complemental strand, 21577230 - 21577171
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  21577230 ccgagagaacccgggttcgagccccactaatgcctttggagggaggtaaatgtaaatacc 21577171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 651 - 705
Target Start/End: Original strand, 48176399 - 48176453
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaa 705  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  48176399 ccgagagaatccgggttcgagccccgctagtgcctttggaaggaggtaaatgtaa 48176453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 653 - 710
Target Start/End: Original strand, 11216771 - 11216828
Alignment:
Q  653 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||    
T  11216771 gagagaacccgggttcgagccccattagtgcctttggagggaggtaaatgtaaatacc 11216828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 651 - 708
Target Start/End: Original strand, 45278452 - 45278509
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaatta 708  Q
    |||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  45278452 ccgagataacccgggttcgagccccgctagtgcctttgaagggaagtaaatgtaatta 45278509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 651 - 708
Target Start/End: Complemental strand, 38405286 - 38405229
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaatta 708  Q
    |||||||||  || ||||||||| ||||||||||||||||||||||||||||||||||    
T  38405286 ccgagagaattcgagttcgagcctcgctagtgcctttggagggaggtaaatgtaatta 38405229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 664 - 708
Target Start/End: Complemental strand, 245383 - 245339
Alignment:
Q  664 ggttcgagccccgctagtgcctttggagggaggtaaatgtaatta 708  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  245383 ggttcgagccccgctagtgcccttggagggaggtaaatgtaatta 245339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 669 - 710
Target Start/End: Complemental strand, 37095324 - 37095283
Alignment:
Q  669 gagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  37095324 gagccccgctagtgtctttggagggaggtaaatgtaattacc 37095283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 652 - 710
Target Start/End: Original strand, 23028684 - 23028742
Alignment:
Q  652 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||| |||||||||| | || ||| ||||||| |||||| |||||||||||||||    
T  23028684 cgagagaatccgggttcgaactcctctaatgcctttagagggatgtaaatgtaattacc 23028742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 3e-47; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 8363300 - 8363424
Alignment:
Q  7 tgagatgaacctgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctcagattttacgtttcattttct 106  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||| |||| |||||| |||||||||||    
T  8363300 tgagatgaccctgttgtactctggaggagttgcgcaattctgcggataattccttagttcagtgacatagtcacgcatcaggttttacctttcattttct 8363399  T
Q  107 tgttttgcaggttgtgatccttcag 131  Q
    |||||||||||||||||||||||||    
T  8363400 tgttttgcaggttgtgatccttcag 8363424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 651 - 710
Target Start/End: Complemental strand, 45137102 - 45137043
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45137102 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 45137043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 651 - 710
Target Start/End: Complemental strand, 6672925 - 6672866
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6672925 ccgagagaacccgggttcaagccccgctagtgcctttggagggaggtaaatgtaattacc 6672866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 651 - 710
Target Start/End: Complemental strand, 25987794 - 25987735
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25987794 ccgagagaactcgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 25987735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 651 - 710
Target Start/End: Original strand, 40156040 - 40156099
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40156040 ccgagagaatccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 40156099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 8365593 - 8365670
Alignment:
Q  63 gttcagtgacattgtcacgcctcagattttacgtttcattttcttgttttgcaggttgtgatccttcagtcatccgcg 140  Q
    |||||||||||| |||||||||||| |||||  |||||| |||||||||| |||||||||||||||||||||||||||    
T  8365593 gttcagtgacatagtcacgcctcaggttttatttttcatgttcttgtttttcaggttgtgatccttcagtcatccgcg 8365670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 652 - 710
Target Start/End: Original strand, 21637898 - 21637956
Alignment:
Q  652 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  21637898 cgagagaacccgggtttgagccccgctagtgcctttggagggaggtaaatgtaaatacc 21637956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 653 - 710
Target Start/End: Original strand, 17136389 - 17136446
Alignment:
Q  653 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  17136389 gagagaacccgggttcgagccccgttagtgcctttggagggaggtaaatgtaaatacc 17136446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 652 - 708
Target Start/End: Complemental strand, 10745363 - 10745307
Alignment:
Q  652 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaatta 708  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  10745363 cgagagaacccgggtccgagccccgctagtgcctttagagggaggtaaatgtaatta 10745307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 33357996 - 33358055
Alignment:
Q  8 gagatgaacctgttgtactctgggggagttgcgcaattctgcggataattcctttgttca 67  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||    
T  33357996 gagatgaacctgttgtactctggaggagttgcgcaattctacggataattccttagttca 33358055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 651 - 710
Target Start/End: Complemental strand, 36836461 - 36836402
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||    
T  36836461 ccgagagaacccgagttcgagtcccgctggtgcctttggagggaggtaaatgtaattacc 36836402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 27529086 - 27529220
Alignment:
Q  8 gagatgaacctgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctcagattttacgtttcattttctt 107  Q
    ||||||||||| ||||| | |||| |||||| |||||| ||||||||||||||| ||  |||||| | |||||||||||  ||| |  || |||||| ||    
T  27529086 gagatgaacctattgtattatgggtgagttgtgcaattatgcggataattccttagtctagtgacgtagtcacgcctcatttttcagtttacattttatt 27529185  T
Q  108 gttttgcaggttgtgatccttcagtcatccgcgaa 142  Q
    |||||| || |||||||| ||| ||||||||||||    
T  27529186 gttttgtagtttgtgatcattcggtcatccgcgaa 27529220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 651 - 704
Target Start/End: Complemental strand, 7860278 - 7860225
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgta 704  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  7860278 ccgagagaacctgggtttgagccccgctagtgcctttggagggaggtaaatgta 7860225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 654 - 710
Target Start/End: Original strand, 3200884 - 3200940
Alignment:
Q  654 agagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||    
T  3200884 agagaacctggattcgagcctcgctagtgcctttggagggaggtaaatgtaattacc 3200940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 651 - 710
Target Start/End: Original strand, 44650393 - 44650452
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||||  ||||||| ||| |||||||||||||||||||||||||||||||||    
T  44650393 ccgagagaacccgatttcgagctccgttagtgcctttggagggaggtaaatgtaattacc 44650452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 652 - 710
Target Start/End: Original strand, 26690155 - 26690213
Alignment:
Q  652 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||| | ||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  26690155 cgagagaatctgggttcgagtcccgctagtgcttttggagggaggtaaatgtaattacc 26690213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 651 - 710
Target Start/End: Complemental strand, 2357207 - 2357148
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||||||||||||  || ||||| ||||||||||||||||||||||| ||||    
T  2357207 ccgagagaacccgggttcgagttccactagtacctttggagggaggtaaatgtaaatacc 2357148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 651 - 710
Target Start/End: Complemental strand, 2754183 - 2754124
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||||| |||||| ||| ||| ||||||||||||||||||||||||| ||||    
T  2754183 ccgagagaacccggattcgagtcccactaatgcctttggagggaggtaaatgtaaatacc 2754124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 651 - 710
Target Start/End: Original strand, 5039420 - 5039479
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||| ||||||||||| |||||||||| ||| |||||||||||| |||||||||    
T  5039420 ccgagagaactcgggttcgagctccgctagtgcttttagagggaggtaaacgtaattacc 5039479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 652 - 707
Target Start/End: Complemental strand, 36380263 - 36380208
Alignment:
Q  652 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaatt 707  Q
    ||||| ||| |||||| || ||||||||||||||||||||||||||||||||||||    
T  36380263 cgagaaaactcgggtttgaaccccgctagtgcctttggagggaggtaaatgtaatt 36380208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 652 - 705
Target Start/End: Complemental strand, 30372811 - 30372758
Alignment:
Q  652 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaa 705  Q
    ||||||| || |||||||||| ||||||||||||||||| ||||||||||||||    
T  30372811 cgagagatcctgggttcgagctccgctagtgcctttggaaggaggtaaatgtaa 30372758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 673 - 709
Target Start/End: Complemental strand, 558549 - 558513
Alignment:
Q  673 cccgctagtgcctttggagggaggtaaatgtaattac 709  Q
    |||||||||||||||||||||||||||||||||||||    
T  558549 cccgctagtgcctttggagggaggtaaatgtaattac 558513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 40862886 - 40862766
Alignment:
Q  13 gaacctgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctcagattttacgtttcattttcttgtttt 112  Q
    |||||||||||| | ||| ||| ||| | |||  ||||||||||| ||| |||||||||    ||||| ||||| ||||||| || |||||| |||||||    
T  40862886 gaacctgttgtattttggaggaattgtgtaatcatgcggataattacttagttcagtgattacgtcacacctcatattttactttacattttattgtttt 40862787  T
Q  113 gcaggttgtgatccttcagtc 133  Q
      ||||||||||| |||||||    
T  40862786 ataggttgtgatctttcagtc 40862766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 652 - 710
Target Start/End: Complemental strand, 13047282 - 13047226
Alignment:
Q  652 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||| |||||||||||||||||  ||  |||||||||||||||||| ||||||||    
T  13047282 cgagagaatccgggttcgagccccgcatgt--ctttggagggaggtaaatataattacc 13047226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 666 - 705
Target Start/End: Original strand, 20961496 - 20961535
Alignment:
Q  666 ttcgagccccgctagtgcctttggagggaggtaaatgtaa 705  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  20961496 ttcgagctccgctagtgcccttggagggaggtaaatgtaa 20961535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 7972 - 8103
Alignment:
Q  8 gagatgaacctgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctcagattttacgtttcattttctt 107  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| |||||| |||||| ||| ||||||||    
T  7972 gagatgaacctgttgtactctgggggagttgcgcaattttgcggataattccttagttcagtgacatagtcacacctcaggttttactttttattttctt 8071  T
Q  108 gttttgcaggttgtgatccttcagtcatccgc 139  Q
    |||||||||||| ||||||||| |||||||||    
T  8072 gttttgcaggttatgatccttccgtcatccgc 8103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 6799125 - 6799266
Alignment:
Q  7 tgagatgaacctgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctcagattttacgtttcattttct 106  Q
    ||||| |||||||| ||||| ||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| ||| |||||| ||| |||||||    
T  6799125 tgagaagaacctgtagtactttgggggagtcgcgcaattctgcggataattccttagttcagtgacatagtcacgccacaggttttactttttattttct 6799224  T
Q  107 tgttttgcaggttgtgatccttcagtcatccgcgaacaacaa 148  Q
    | ||||||||||||||||||||||||||||||| ||||||||    
T  6799225 tattttgcaggttgtgatccttcagtcatccgcaaacaacaa 6799266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 10 - 147
Target Start/End: Complemental strand, 8986733 - 8986594
Alignment:
Q  10 gatgaacctgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgaca--ttgtcacgcctcagattttacgtttcattttctt 107  Q
    ||||||||| |||||  ||||||||||||||||||||| ||||||||||||| || ||||||||  | ||||||||||||||||||||||| ||||  ||    
T  8986733 gatgaaccttttgtatgctgggggagttgcgcaattctacggataattccttagtccagtgacacgtagtcacgcctcagattttacgttttatttcatt 8986634  T
Q  108 gttttgcaggttgtgatccttcagtcatccgcgaacaaca 147  Q
    |||||||||| ||||||||||| ||||||| || ||||||    
T  8986633 gttttgcagggtgtgatccttcggtcatccacgtacaaca 8986594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 8996206 - 8996066
Alignment:
Q  10 gatgaacctgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgaca--ttgtcacgcctcagattttacgtttcattttctt 107  Q
    ||||||||||||||| | ||||||||||| |||||||||||||||||||||| || ||||||||  |  |||| ||| ||||||||||||| ||||  ||    
T  8996206 gatgaacctgttgtattttgggggagttgtgcaattctgcggataattccttagtccagtgacacgtaatcacaccttagattttacgttttatttcatt 8996107  T
Q  108 gttttgcaggttgtgatccttcagtcatccgcgaacaacaa 148  Q
    |||||||||| |||||||||||||||||||||  |||||||    
T  8996106 gttttgcaggatgtgatccttcagtcatccgcatacaacaa 8996066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 42528436 - 42528323
Alignment:
Q  18 tgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctcagattttacgtttcattttcttgttttgcagg 117  Q
    ||||||| | |||||||||||||||||||||| |||||||||||         |||| |||||||||||  |||||||||||||||||||||||||||||    
T  42528436 tgttgtattttgggggagttgcgcaattctgcagataattcctta--------acatagtcacgcctcaagttttacgtttcattttcttgttttgcagg 42528345  T
Q  118 ttgtgatccttcagtcatccgc 139  Q
    ||||||||||||||||||||||    
T  42528344 ttgtgatccttcagtcatccgc 42528323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 652 - 709
Target Start/End: Original strand, 36192542 - 36192599
Alignment:
Q  652 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattac 709  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36192542 cgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaattac 36192599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 651 - 710
Target Start/End: Original strand, 8740448 - 8740507
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8740448 ccgagagatcccgggttcgagccccgctagtgcctttggagggaggtaaatgtaaatacc 8740507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 651 - 710
Target Start/End: Complemental strand, 46494530 - 46494471
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  46494530 ccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaaatacc 46494471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 651 - 710
Target Start/End: Original strand, 32139164 - 32139223
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  32139164 ccgagagaacctgggttcgaaccccgctagtgtctttggagggaggtaaatgtaattacc 32139223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 651 - 710
Target Start/End: Complemental strand, 39863910 - 39863851
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||    
T  39863910 ccgagagaacccgggttcggaccccgctagtgcctttggagggaagtaaatgtaattacc 39863851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 651 - 710
Target Start/End: Original strand, 51066493 - 51066552
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  51066493 ccgagagaactcgggttcgagctccgctagtgcctttggagggaggtaaatataattacc 51066552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 651 - 708
Target Start/End: Original strand, 50905748 - 50905805
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaatta 708  Q
    ||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||    
T  50905748 ccgagagaatctgggttcgagccccgctagtgcctttggagagaggtaaatgtaatta 50905805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 651 - 710
Target Start/End: Complemental strand, 51714097 - 51714038
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| ||||    
T  51714097 ccgagagaacccgggttcgagccccactagtgcctttgaagggaggtaaatataaatacc 51714038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 651 - 710
Target Start/End: Complemental strand, 30970516 - 30970457
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||| ||||||||||||| | |||||||||||| |||||||||||||||| ||||    
T  30970516 ccgagagaatccgggttcgagcctcactagtgcctttgaagggaggtaaatgtaaatacc 30970457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 652 - 709
Target Start/End: Complemental strand, 2294841 - 2294784
Alignment:
Q  652 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattac 709  Q
    ||||||||| ||||||||||   |||||||||||||||||| ||||||||||||||||    
T  2294841 cgagagaactcgggttcgagtttcgctagtgcctttggaggaaggtaaatgtaattac 2294784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 6806927 - 6806985
Alignment:
Q  64 ttcagtgacattgtcacgcctcagattttacgtttcattttcttgttttgcaggttgtga 123  Q
    ||||||||||| |||||||||||| |||||| ||| |||||||||||||| |||||||||    
T  6806927 ttcagtgacatagtcacgcctcaggttttac-ttttattttcttgttttgtaggttgtga 6806985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 651 - 710
Target Start/End: Complemental strand, 47627127 - 47627066
Alignment:
Q  651 ccgagagaacccgggttcgag--ccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||||| ||||||  |||| |||||||||||| |||||||||||||||| ||||    
T  47627127 ccgagagaacccggattcgagagccccactagtgcctttgaagggaggtaaatgtaaatacc 47627066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 651 - 703
Target Start/End: Complemental strand, 7173717 - 7173665
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgt 703  Q
    |||||||||||  ||||| || |||||||||||||||||| ||||||||||||    
T  7173717 ccgagagaacctaggttcaagacccgctagtgcctttggaaggaggtaaatgt 7173665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 662 - 710
Target Start/End: Complemental strand, 50399763 - 50399715
Alignment:
Q  662 cgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||||||||||||||  ||||||| |||||||||||| ||||    
T  50399763 cgggttcgagccccgctagtgctcttggaggaaggtaaatgtaaatacc 50399715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 3e-44; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 13016481 - 13016342
Alignment:
Q  8 gagatgaacctgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctcagattttacgtttcattttctt 107  Q
    |||| |||||||||||||| ||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||     
T  13016481 gagaagaacctgttgtactatggggaagttacgcaattctgcagataattccttagttcagtgacattgtcacgcctcagattttacgttttattttctg 13016382  T
Q  108 gttttgcaggttgtgatccttcagtcatccgcgaacaaca 147  Q
     ||||||||||| |||||||| ||||||||||||| ||||    
T  13016381 tttttgcaggttatgatcctttagtcatccgcgaataaca 13016342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 47323268 - 47323405
Alignment:
Q  8 gagatgaacctgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctcagattttacgtttcattttctt 107  Q
    |||| |||| ||||||||||| ||||| |||||||||| ||||||||||||||| |||| ||||||| |||||||   || |||||| ||| ||||||||    
T  47323268 gagaagaacatgttgtactcttggggaattgcgcaattttgcggataattccttagttcggtgacatagtcacgc---aggttttactttttattttctt 47323364  T
Q  108 gttttgcaggttgtgatccttcagtcatccgcgaacaacaa 148  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47323365 gttttgcaggttgtgatccttcagtcatccgcgaacaacaa 47323405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 47326868 - 47326982
Alignment:
Q  34 agttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctcagattttacgtttcattttcttgttttgcaggttgtgatccttcagtc 133  Q
    ||||||||||||||||||||| |||||| |||| ||||||| ||||||||||| |||||||  || | |||||||||||||||||||||||||||| |||    
T  47326868 agttgcgcaattctgcggatatttccttagttctgtgacatagtcacgcctcaaattttactctttactttcttgttttgcaggttgtgatccttctgtc 47326967  T
Q  134 atccgcgaacaacaa 148  Q
    |||||||||||||||    
T  47326968 atccgcgaacaacaa 47326982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 651 - 710
Target Start/End: Complemental strand, 30054574 - 30054515
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30054574 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 30054515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 651 - 709
Target Start/End: Original strand, 20014458 - 20014516
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattac 709  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  20014458 ccgagagaacccgggttcgagtcccgctagtacctttggagggaggtaaatgtaattac 20014516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 652 - 710
Target Start/End: Complemental strand, 30370191 - 30370133
Alignment:
Q  652 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  30370191 cgagagaatccgggttcgagccccactagtgtctttggagggaggtaaatgtaattacc 30370133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 651 - 710
Target Start/End: Original strand, 4573379 - 4573438
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||||||||||||||||| ||| || |||||||||||||||||||||| ||||    
T  4573379 ccgagagaacccgggttcgagccccactaatgtctttggagggaggtaaatgtaaatacc 4573438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 651 - 710
Target Start/End: Original strand, 45324006 - 45324065
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  45324006 ccgagagaacctgggttccagccccgctagtgcttttggagggaggtaaatgtaaatacc 45324065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 652 - 710
Target Start/End: Original strand, 12025182 - 12025240
Alignment:
Q  652 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||| |||||||||||||  ||||||||||||||| |||||||||||||||||    
T  12025182 cgagagaacctgggttcgagccccattagtgcctttggaggaaggtaaatgtaattacc 12025240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 652 - 705
Target Start/End: Original strand, 21090116 - 21090169
Alignment:
Q  652 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaa 705  Q
    ||||||||  ||||||||||||||||||||||| ||||||||||||||||||||    
T  21090116 cgagagaattcgggttcgagccccgctagtgccgttggagggaggtaaatgtaa 21090169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 651 - 707
Target Start/End: Complemental strand, 30850972 - 30850916
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaatt 707  Q
    |||||||||| ||||||||||||||| ||||| |||||||||||||||||| |||||    
T  30850972 ccgagagaactcgggttcgagccccgttagtgtctttggagggaggtaaatataatt 30850916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 664 - 710
Target Start/End: Complemental strand, 33763373 - 33763327
Alignment:
Q  664 ggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||    
T  33763373 ggttcgagccccgctagtgcctttagagggaggcaaatgtaattacc 33763327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 663 - 709
Target Start/End: Complemental strand, 44438670 - 44438624
Alignment:
Q  663 gggttcgagccccgctagtgcctttggagggaggtaaatgtaattac 709  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||    
T  44438670 gggttcgagctccgctaatgcctttggagggaggtaaatgtaattac 44438624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 669 - 710
Target Start/End: Original strand, 22024121 - 22024162
Alignment:
Q  669 gagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||| ||||||||||||||| |||||||||||||||||||    
T  22024121 gagccctgctagtgcctttggatggaggtaaatgtaattacc 22024162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 291364 - 291407
Alignment:
Q  95 gtttcattttcttgttttgcaggttgtgatccttcagtcatccg 138  Q
    |||| ||||| | |||||||||||||||||||||||||||||||    
T  291364 gttttattttatcgttttgcaggttgtgatccttcagtcatccg 291407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 680 - 710
Target Start/End: Complemental strand, 14498182 - 14498152
Alignment:
Q  680 gtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||||||||||||||||||||||    
T  14498182 gtgcctttggagggaggtaaatgtaattacc 14498152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 651 - 697
Target Start/End: Original strand, 15034455 - 15034501
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggt 697  Q
    |||| ||||||| |||||||||||  |||||||||||||||||||||    
T  15034455 ccgaaagaacccaggttcgagccctactagtgcctttggagggaggt 15034501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 6e-42; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 28703804 - 28703673
Alignment:
Q  8 gagatgaacctgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctcagattttacgtttcattttctt 107  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||  ||| |||||| ||||||| ||| ||||||||    
T  28703804 gagatgaacttgttgtactttgggggagttgcgcaattctgcggataattccttagttcagtgacataatcatgcctcaaattttactttttattttctt 28703705  T
Q  108 gttttgcaggttgtgatccttcagtcatccgc 139  Q
    |||||||||||| |||||||||| ||||||||    
T  28703704 gttttgcaggttatgatccttcactcatccgc 28703673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 36612068 - 36611959
Alignment:
Q  28 tgggggagttgcgcaattctgcggataattcctttgttcagtgacatt-gtcacgcctcagattttacgtttcattttcttgttttgcaggttgtgatcc 126  Q
    ||||||||||||||||||||| | |||||| ||| || |||||||  | ||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  36612068 tgggggagttgcgcaattctgtgaataatttcttagtccagtgacggtagtcacgccttagattttacgtttcattttattgttttgcaggttgtgatcc 36611969  T
Q  127 ttcagtcatc 136  Q
    ||||||||||    
T  36611968 ttcagtcatc 36611959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 651 - 710
Target Start/End: Original strand, 7417798 - 7417857
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7417798 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 7417857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 651 - 710
Target Start/End: Original strand, 8400855 - 8400914
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400855 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 8400914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 652 - 710
Target Start/End: Original strand, 22855888 - 22855946
Alignment:
Q  652 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  22855888 cgagagaacccaggttcgagccccgctagtgtctttggagggaggtaaatgtaattacc 22855946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 32893846 - 32893797
Alignment:
Q  8 gagatgaacctgttgtactctgggggagttgcgcaattctgcggataatt 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32893846 gagatgaacctgttgtactctgggggagttgcgcaattctgcggataatt 32893797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 32893717 - 32893789
Alignment:
Q  76 gtcacgcctcagattttacgtttcattttcttgttttgcaggttgtgatccttcagtcatccgcgaacaacaa 148  Q
    |||||||||||| |||||| | | |||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  32893717 gtcacgcctcaggttttacttgttattttcttgttttgcaggttatgatccttcagtcatccgcaaacaacaa 32893789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 651 - 710
Target Start/End: Original strand, 50823698 - 50823757
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  50823698 ccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacc 50823757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 651 - 710
Target Start/End: Complemental strand, 50852162 - 50852103
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  50852162 ccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacc 50852103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 651 - 710
Target Start/End: Original strand, 35198765 - 35198824
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||    
T  35198765 ccgagagaacccgggttcgagccccactaatgcctttgcagggaggtaaatgtaaatacc 35198824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 651 - 705
Target Start/End: Complemental strand, 43334186 - 43334132
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaa 705  Q
    ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||    
T  43334186 ccgagagaacccgagttcgagccccgctagtgtcttgggagggaggtaaatgtaa 43334132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 652 - 710
Target Start/End: Original strand, 55468000 - 55468058
Alignment:
Q  652 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||| ||||||||||||||| ||| ||| ||||||||||||||||||||| ||||    
T  55468000 cgagagaatccgggttcgagccccactaatgcgtttggagggaggtaaatgtaaatacc 55468058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 651 - 708
Target Start/End: Original strand, 34824556 - 34824613
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaatta 708  Q
    ||||||||||| | ||||||| |||| ||||||||||| |||||||||||||||||||    
T  34824556 ccgagagaacctgagttcgagtcccgttagtgcctttgaagggaggtaaatgtaatta 34824613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 652 - 705
Target Start/End: Complemental strand, 48078072 - 48078019
Alignment:
Q  652 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaa 705  Q
    ||||||||| |||||||||||| | |||||||||||||||| ||||||||||||    
T  48078072 cgagagaactcgggttcgagcctcactagtgcctttggaggaaggtaaatgtaa 48078019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 666 - 710
Target Start/End: Original strand, 29635883 - 29635927
Alignment:
Q  666 ttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||| |||||||||||||| |||||||||||||||||||||    
T  29635883 ttcgagcctcgctagtgcctttgaagggaggtaaatgtaattacc 29635927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 662 - 705
Target Start/End: Original strand, 52545332 - 52545375
Alignment:
Q  662 cgggttcgagccccgctagtgcctttggagggaggtaaatgtaa 705  Q
    ||||||||||||||||||||||||||  ||||||||||||||||    
T  52545332 cgggttcgagccccgctagtgcctttaaagggaggtaaatgtaa 52545375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 8878929 - 8878855
Alignment:
Q  13 gaacctgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctcag 87  Q
    |||||||||||| ||||||||| |||||||||  ||| |||||||  || |||||||||| | ||||||||||||    
T  8878929 gaacctgttgtattctgggggaattgcgcaatcttgctgataattgtttagttcagtgacgtagtcacgcctcag 8878855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 651 - 709
Target Start/End: Complemental strand, 50726129 - 50726071
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattac 709  Q
    |||||||||  ||||||||||||||| ||||| ||||||||| |||||||| |||||||    
T  50726129 ccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattac 50726071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 651 - 709
Target Start/End: Original strand, 50786719 - 50786777
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattac 709  Q
    |||||||||  ||||||||||||||| ||||| ||||||||| |||||||| |||||||    
T  50786719 ccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattac 50786777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 680 - 710
Target Start/End: Complemental strand, 22371832 - 22371802
Alignment:
Q  680 gtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||||||||||||||||||||||    
T  22371832 gtgcctttggagggaggtaaatgtaattacc 22371802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 40254861 - 40254998
Alignment:
Q  8 gagatgaacctgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctcagattttacgtttcattttctt 107  Q
    ||||||||||||||||||| ||| ||||||||||||||||| |||||||||||| |||||||||||| |||||||||    |||||||||| ||||| ||    
T  40254861 gagatgaacctgttgtactatggaggagttgcgcaattctgtggataattccttagttcagtgacatagtcacgcct---gttttacgttttattttatt 40254957  T
Q  108 gttttgcaggttgtgatccttcagtcatccgcgaacaacaa 148  Q
     |||| |||||||||||||||||||||||||||||||||||    
T  40254958 attttacaggttgtgatccttcagtcatccgcgaacaacaa 40254998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 26050014 - 26050140
Alignment:
Q  15 acctgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctca-gatttta-cgtttcattttcttgtttt 112  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||| | ||||| | ||| | |||  ||||||    
T  26050014 acctgttgtattctgggggagttgcgcaattctgcggataattccttagtccagtgacttagtcacgcctcagggttttacctttttagtttactgtttt 26050113  T
Q  113 gcaggttgtgatccttcagtcatccgc 139  Q
    |||||||||||| ||||||||||||||    
T  26050114 gcaggttgtgatacttcagtcatccgc 26050140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 26053428 - 26053554
Alignment:
Q  15 acctgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctca-gatttta-cgtttcattttcttgtttt 112  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||| || ||||||| | ||||||||||| | ||||| | ||| | |||  ||||||    
T  26053428 acctgttgtattctgggggagttgcgcaattctacggataattccttagtccagtgacttagtcacgcctcagggttttacctttttagtttactgtttt 26053527  T
Q  113 gcaggttgtgatccttcagtcatccgc 139  Q
    |||||||||||| ||||||||||||||    
T  26053528 gcaggttgtgatacttcagtcatccgc 26053554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 651 - 710
Target Start/End: Original strand, 17064323 - 17064382
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  17064323 ccgagagaacccgggttcgagcctcgctagtgcctttggagggaggtaaatgtaaatacc 17064382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 654 - 709
Target Start/End: Complemental strand, 20983132 - 20983077
Alignment:
Q  654 agagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattac 709  Q
    |||||| |||||||||||||||||||||||||| |||| |||||||||| ||||||    
T  20983132 agagaatccgggttcgagccccgctagtgccttcggagagaggtaaatgcaattac 20983077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 651 - 701
Target Start/End: Original strand, 37976546 - 37976596
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaat 701  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||||||||    
T  37976546 ccgagagaacctgggttcgagccccgctagtgcatttgaagggaggtaaat 37976596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 652 - 703
Target Start/End: Complemental strand, 35237154 - 35237103
Alignment:
Q  652 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgt 703  Q
    |||||||| | || ||||||||||||||||| ||||| ||||||||||||||    
T  35237154 cgagagaatctggattcgagccccgctagtgtctttgaagggaggtaaatgt 35237103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 27074981 - 27075107
Alignment:
Q  15 acctgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctcaga-ttttacgtttc-attttcttgtttt 112  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||  |||||| |||  | ||| |||||||    
T  27074981 acctgttgtattctgggggagttgcgcaattctgcggataattccttagtccagtgacttagtcacgcctcagggttttacctttttagtttattgtttt 27075080  T
Q  113 gcaggttgtgatccttcagtcatccgc 139  Q
    |||||||||||| ||||||||||||||    
T  27075081 gcaggttgtgatacttcagtcatccgc 27075107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 27078346 - 27078470
Alignment:
Q  17 ctgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctca-gatttta-cgtttcattttcttgttttgc 114  Q
    |||||||| |||||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||| | ||||| | ||| | |||  ||||||||    
T  27078346 ctgttgtattctgggggagttgcgcaattctgcggataattccttagtccagtgacttagtcacgcctcagggttttacctttttagtttactgttttgc 27078445  T
Q  115 aggttgtgatccttcagtcatccgc 139  Q
    |||||||||| ||||||||||||||    
T  27078446 aggttgtgatacttcagtcatccgc 27078470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 651 - 705
Target Start/End: Original strand, 14496352 - 14496406
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaa 705  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14496352 ccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaa 14496406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 653 - 710
Target Start/End: Complemental strand, 19686957 - 19686900
Alignment:
Q  653 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||    
T  19686957 gagagaacctgggttcgagcccctctagtgcctttgtagggaggtaaatgtaattacc 19686900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 651 - 710
Target Start/End: Complemental strand, 35163882 - 35163823
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  35163882 ccgagagaaccagggttcgagccccactaatgcctttggagggaggtaaatgtaaatacc 35163823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 651 - 706
Target Start/End: Complemental strand, 14505655 - 14505600
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaat 706  Q
    |||||||| ||||  |||||||||||||||||| ||||||||||||||||||||||    
T  14505655 ccgagagatcccgaattcgagccccgctagtgcttttggagggaggtaaatgtaat 14505600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 672 - 710
Target Start/End: Original strand, 20685346 - 20685384
Alignment:
Q  672 ccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20685346 ccccgctagtgcctttggagggaggtaaatgtaattacc 20685384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 651 - 710
Target Start/End: Complemental strand, 2711866 - 2711807
Alignment:
Q  651 ccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||| |||||| || |||||||||| ||||||| ||||||||||||||||||||| ||||    
T  2711866 ccgatagaacctggattcgagccccactagtgcttttggagggaggtaaatgtaaatacc 2711807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 652 - 710
Target Start/End: Complemental strand, 107822 - 107764
Alignment:
Q  652 cgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  107822 cgagagaacccgagttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 107764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 653 - 710
Target Start/End: Complemental strand, 7099 - 7042
Alignment:
Q  653 gagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacc 710  Q
    ||||||| ||||||||||| ||||||||||| |||||||||| |||||||||||||||    
T  7099 gagagaatccgggttcgagtcccgctagtgcgtttggagggaagtaaatgtaattacc 7042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 206191 - 206259
Alignment:
Q  18 tgttgtactctgggggagttgcgcaattctgcggataattcctttgttcagtgacattgtcacgcctca 86  Q
    ||||||| |||||||||||||||| ||| || |||||||||||| || || |||| | |||||||||||    
T  206191 tgttgtattctgggggagttgcgctattatgtggataattccttagtccaatgacctagtcacgcctca 206259  T

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