View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11709_high_3 (Length: 637)
Name: NF11709_high_3
Description: NF11709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11709_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 17 - 627
Target Start/End: Original strand, 7571113 - 7571723
Alignment:
| Q |
17 |
caataggagcacgatttgaattacaaaatccatctcatacacctcgaatgtatcactccactgcaattttggttcgtgatggtagggttcttgttggtgg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7571113 |
caataggagcacgatttgaattacaaaacccatctcatacacctcgaatgtatcattccactgcaattttggttcgtgatggtagggttcttgttggtgg |
7571212 |
T |
|
| Q |
117 |
tagcaaccctcacattggttacaattttaacaatgtgttgtttccaactgaacttagtatcgaagctttttctccttcttaccttgaacctcgattcgcg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7571213 |
tagcaaccctcacattggttacaattttaacaatgtgttgtttccaactgaacttagtatcgaagctttttctccttcttaccttgaacctcgcttcgcg |
7571312 |
T |
|
| Q |
217 |
aatgttcgtccaaggattgtggcttctacttcggaattgcaaaagcacggtcaaaagttgggattgcgatttcaagtaaaagcagcattggataagaatt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7571313 |
aatgttcgtccaaggattgtggcttctacttcggaattgcaaaagcacggtcaaaagttgggattgcgatttcaagtaaaagcagcattggataagaatt |
7571412 |
T |
|
| Q |
317 |
tggtatatgttacgatgttggcaccaccttttaacacacactcgttctccatgaatcagaggttgttggtgttggagtcaaacaaagtgaatattgtgga |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7571413 |
tggtatatgttacgatgttggcaccaccttttaacacacactcattctccatgaatcagaggttgttggtgttggagtcaaacaaagtgaatattgtgga |
7571512 |
T |
|
| Q |
417 |
gggaacaacgtatgatgttcaggttactatgccgggttcacctattcttgcacctcccggattttatctactatttgtggttcataaagaaattcctagt |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7571513 |
gggaacaacgtatgatgttcaggttactatgccgggttcacctattcttgcgcctcctggattttatctactatttgtggttcataaagaaattcctagt |
7571612 |
T |
|
| Q |
517 |
gaaggaatttggatacaaatactttaattttcaaatgcaactgtgtggtaaataataaatttgcttttatattatcaaagaaagtttgtttattaccctc |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7571613 |
gaaggaatttggatacaaatactttaattttcaaatgcaactgtgtggtaaataataaatttgcttttatattatcaaagaaagtttgtttattaccctc |
7571712 |
T |
|
| Q |
617 |
tctaatctctg |
627 |
Q |
| |
|
||||||||||| |
|
|
| T |
7571713 |
tctaatctctg |
7571723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 343 - 548
Target Start/End: Original strand, 531610 - 531815
Alignment:
| Q |
343 |
ccttttaacacacactcgttctccatgaatcagaggttgttggtgttggagtcaaacaaagtgaatattgtggagggaacaacgtatgatgttcaggtta |
442 |
Q |
| |
|
|||||||| ||||| || ||||| |||||||| |||||||||||||||||| ||| ||||| ||| |||| | |||||||| ||||| || | |||| |
|
|
| T |
531610 |
ccttttaatacacattcattctcaatgaatcaaaggttgttggtgttggagcaaaataaagtaaatcgtgtgaacggaacaacatatgaaattgaagtta |
531709 |
T |
|
| Q |
443 |
ctatgccgggttcacctattcttgcacctcccggattttatctactatttgtggttcataaagaaattcctagtgaaggaatttggatacaaatacttta |
542 |
Q |
| |
|
| ||||| ||||||||||||||||||||| || |||||||||||||||||||| | | |||||||||| || || |||||| |||| ||||||| |
|
|
| T |
531710 |
ccgtgccgaattcacctattcttgcacctccaggtttttatctactatttgtggtaaacgcacaaattcctagcgagggtatttgggtacatatactttg |
531809 |
T |
|
| Q |
543 |
attttc |
548 |
Q |
| |
|
|||||| |
|
|
| T |
531810 |
attttc |
531815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 58 - 182
Target Start/End: Original strand, 531313 - 531437
Alignment:
| Q |
58 |
cctcgaatgtatcactccactgcaattttggttcgtgatggtagggttcttgttggtggtagcaaccctcacattggttacaattttaacaatgtgttgt |
157 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||| |||||| | ||||||||||| |||||||| ||||||| ||| | ||||| |||| |
|
|
| T |
531313 |
cctcgaatgtatcattccactgctgttttggttcgtgatgggagggttttggttggtggtagtaaccctcattcgggttacagtttcacaaatgttttgt |
531412 |
T |
|
| Q |
158 |
ttccaactgaacttagtatcgaagc |
182 |
Q |
| |
|
|||||||||| ||||| || ||||| |
|
|
| T |
531413 |
ttccaactgagcttagcattgaagc |
531437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 550
Target Start/End: Original strand, 52914701 - 52914798
Alignment:
| Q |
453 |
ttcacctattcttgcacctcccggattttatctactatttgtggttcataaagaaattcctagtgaaggaatttggatacaaatactttaattttcaa |
550 |
Q |
| |
|
|||||| |||||||||||||| |||| |||| ||||||||||||| ||| ||||| |||| ||| | || ||||| | ||| |||| |||||||||| |
|
|
| T |
52914701 |
ttcacccattcttgcacctccgggatattatttactatttgtggtccatcaagaagttccaagtcagggtgtttgggtccaactactctaattttcaa |
52914798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University