View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11709_high_8 (Length: 255)
Name: NF11709_high_8
Description: NF11709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11709_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 38454265 - 38454026
Alignment:
| Q |
1 |
atcagatattctattcaaatggggatgtttacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatggggatcagtata |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38454265 |
atcagatattctattcaaatggggatgtctacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatgtggatcagtata |
38454166 |
T |
|
| Q |
101 |
tgagggtgattggattgatggagatatagcaaggaaaggacgattgttcttacatccatgaggaccaaattatgagggtgagttctctagagattgccgt |
200 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38454165 |
tgagggtgattggattgatggagatatggcaaggaaaggacgattattcttacatccatgaggaccaaattatgagggtgagttctctggagattgccgt |
38454066 |
T |
|
| Q |
201 |
catggtaatggcacccaaacttggcaggatggaggtatct |
240 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
38454065 |
catggtaatggcacccaaacttggaaggatggaggtatct |
38454026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 39847983 - 39848190
Alignment:
| Q |
12 |
tattcaaatggggatgtttacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtgatt |
111 |
Q |
| |
|
|||||| ||| || ||||||| |||||||| ||||||||| |||| ||||||||| |||||| ||||| |||| |||||| |||||| |||||||| |
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| T |
39847983 |
tattcagatgagggtgtttacattggtaacatcaaggatggacttgctcatggcaaaagaaagtacacatggtcagatggatcaatatatgtgggtgatt |
39848082 |
T |
|
| Q |
112 |
ggattgatggagatatagcaaggaaaggacgattgttcttacatccatgaggaccaaattatgagggtgagttctctagagattgccgtcatggtaatgg |
211 |
Q |
| |
|
|| |||||||||||| || |||||| |||||||| |||| |||| |||| || ||||||||||| |||| | | || |||||||||| ||||| |
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| T |
39848083 |
gggttgatggagataagacagggaaag---gattgttcatacagccatcaggagacaagtatgagggtgaattctttgggaatcgccgtcatggcaatgg |
39848179 |
T |
|
| Q |
212 |
cacccaaactt |
222 |
Q |
| |
|
||||||||||| |
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|
| T |
39848180 |
cacccaaactt |
39848190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 34534216 - 34534115
Alignment:
| Q |
21 |
ggggatgtttacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtgattggattgatg |
120 |
Q |
| |
|
|||||||| ||| ||||||||||||||| |||||||| |||||||||||| |||| ||||| |||| ||| || |||||||||| |||||| |||||| |
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| T |
34534216 |
ggggatgtctacattggtaacttcaagggtgaactttgtcatggcaacgggaagtacacatggtcagatggaacaatatatgagggcgattgggttgatg |
34534117 |
T |
|
| Q |
121 |
ga |
122 |
Q |
| |
|
|| |
|
|
| T |
34534116 |
ga |
34534115 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 38632298 - 38632388
Alignment:
| Q |
34 |
ttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtgattggattgatggaga |
124 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| |||||||| || || |||| |||||| |||||||||||||||| |||| ||||| |
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|
| T |
38632298 |
ttggtaacttcaagggtgaacttcgtcatggcagcggaaagtgcaaatggtcagatggatcaacatatgagggtgattgggttgacggaga |
38632388 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 34916786 - 34916678
Alignment:
| Q |
14 |
ttcaaatggggatgtttacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtgattgg |
113 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||||||| ||||||| | ||||||| ||||||| ||||| | || ||| || |||| |||||||| ||| |
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|
| T |
34916786 |
ttcaaatggggatgtctacattggtaaattcaagggtgaacttctccatggcatgggaaagtacacatggacaaatggaacaatatacgagggtgactgg |
34916687 |
T |
|
| Q |
114 |
attgatgga |
122 |
Q |
| |
|
|||||||| |
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|
| T |
34916686 |
gttgatgga |
34916678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 38632425 - 38632490
Alignment:
| Q |
171 |
tatgagggtgagttctctagagattgccgtcatggtaatggcacccaaacttggcaggatggaggt |
236 |
Q |
| |
|
||||||||||| |||| ||| |||| |||||||| |||| ||||||||||||| |||||| |||| |
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|
| T |
38632425 |
tatgagggtgaattctttaggaattgtcgtcatggcaatgacacccaaacttggaaggatgaaggt |
38632490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 44474095 - 44474307
Alignment:
| Q |
21 |
ggggatgtttacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtgattggattgatg |
120 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| |||| | ||||||||||||||| ||||| |||| |||||| ||||||||||||||| |||||| |
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|
| T |
44474095 |
ggggatgtctacgttggtatcttcaaggatggacttcctgatggcaacggaaagtacacatggtcagatggatcaatatatgagggtgattttgttgatg |
44474194 |
T |
|
| Q |
121 |
gagatatagcaaggaaaggacgattgttcttacatccatgaggaccaaattatgagggtgagttctctagagattgccgtcatggtaatggcacccaaac |
220 |
Q |
| |
|
|| | | ||| ||||||||||| |||| |||| |||| || | |||| |||||||| || |||||| | ||| |||||||||||||||||||| ||| |
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|
| T |
44474195 |
gaaaggtggcagggaaaggacgactgttggtacagccatcagcatcaaagtatgagggcgacttctctgggaatttccgtcatggtaatggcaccctaac |
44474294 |
T |
|
| Q |
221 |
ttggcaggatgga |
233 |
Q |
| |
|
|| | |||||||| |
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|
| T |
44474295 |
tttgaaggatgga |
44474307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 14905295 - 14905186
Alignment:
| Q |
13 |
attcaaatggggatgtttacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtgattg |
112 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| || || | ||||| |||||||| ||||||| ||||| |||| |||| | |||||||||||||||| |
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|
| T |
14905295 |
attccaatggggatgtctacgttggtaacttcgagaataatcttttccatggcaagggaaagtgcacatggtcagagggagaaatatatgagggtgattg |
14905196 |
T |
|
| Q |
113 |
gattgatgga |
122 |
Q |
| |
|
| || ||||| |
|
|
| T |
14905195 |
ggtttatgga |
14905186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 14904873 - 14904772
Alignment:
| Q |
21 |
ggggatgtttacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtgattggattgatg |
120 |
Q |
| |
|
|||||||| ||| |||||||||||||| |||| ||||| |||||||| ||||| | ||||| ||| ||| | ||||||||||||||||| |||||| |
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|
| T |
14904873 |
ggggatgtctacattggtaacttcaagaatgatcttttccatggcaaaggaaaatacacatggtcgaatggaaaaatatatgagggtgattgggttgatg |
14904774 |
T |
|
| Q |
121 |
ga |
122 |
Q |
| |
|
|| |
|
|
| T |
14904773 |
ga |
14904772 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 2997941 - 2998045
Alignment:
| Q |
18 |
aatggggatgtttacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtgattggattg |
117 |
Q |
| |
|
||||||||||| | | |||||||||| | |||| ||||| |||||||| ||||||| ||||| |||| | ||| || ||||||||||||||||| ||| |
|
|
| T |
2997941 |
aatggggatgtcttcattggtaactttgaaaatgatcttttccatggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgattgggttg |
2998040 |
T |
|
| Q |
118 |
atgga |
122 |
Q |
| |
|
||||| |
|
|
| T |
2998041 |
atgga |
2998045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 2998561 - 2998624
Alignment:
| Q |
18 |
aatggggatgtttacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacat |
81 |
Q |
| |
|
||||||||| | ||||||||||||||| || |||| ||||||||||||| ||||||| ||||| |
|
|
| T |
2998561 |
aatggggatatctacgttggtaacttcgagaatgatatttttcatggcaagggaaagtacacat |
2998624 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 2997732 - 2997829
Alignment:
| Q |
16 |
caaatggggatgtttacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtgattgg |
113 |
Q |
| |
|
|||||||| |||| ||| ||||||| || |||| || ||||||||||||| ||||||| ||||| |||| | ||| || | ||||||||||||||| |
|
|
| T |
2997732 |
caaatgggcatgtctacattggtaattttaagggaaaattttttcatggcaagggaaagtacacatggtcaagtggaacaatctatgagggtgattgg |
2997829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 7047014 - 7046903
Alignment:
| Q |
10 |
tctattcaaatggggatgtttacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtga |
109 |
Q |
| |
|
|||||||||||||| ||| ||| ||| |||||| |||| ||||| ||||||||||||||| | ||||| |||| |||||| |||||||||| || |
|
|
| T |
7047014 |
tctattcaaatgggagtgtctacattgataactttaaggggcaacttcatcatggcaacggaaactacacatggtcagatggatcaatatatgagggaga |
7046915 |
T |
|
| Q |
110 |
ttggattgatgg |
121 |
Q |
| |
|
|||||||||||| |
|
|
| T |
7046914 |
ttggattgatgg |
7046903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 32716649 - 32716741
Alignment:
| Q |
30 |
tacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtgattggattgatgga |
122 |
Q |
| |
|
||||||||||||||| || ||| ||||| |||||||| ||||||| ||| | || | ||| || ||||||||||||||||| |||||||| |
|
|
| T |
32716649 |
tacgttggtaacttcgagagtgatcttttccatggcaagggaaagtacacgtggttaaatggaacaatatatgagggtgattgggttgatgga |
32716741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 32716856 - 32716948
Alignment:
| Q |
30 |
tacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtgattggattgatgga |
122 |
Q |
| |
|
||||||||||||||| || ||| ||||| |||||||| ||||||| ||||| |||| ||| || |||| || ||||||||| |||||||| |
|
|
| T |
32716856 |
tacgttggtaacttcgagagtgatcttttccatggcaaaggaaagtacacatggtcacatggaacaatatacgatggtgattgggttgatgga |
32716948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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