View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11709_high_9 (Length: 253)
Name: NF11709_high_9
Description: NF11709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11709_high_9 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 187602 - 187364
Alignment:
| Q |
15 |
atgaagacttctaccacgcgtttccactaactatgtaaatgtgattggttttaattgatcttaaagacaacctacaaattttcactcatttcttctaaat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
187602 |
atgaagacttctaccacgcgtttccactaactatgtacatgtgattggttttaattgatttcaaagacaacctacaaattttcactcatttcctttaaat |
187503 |
T |
|
| Q |
115 |
ctcatgctataaacatcttcattatgagaaatgtacacgtttcgttatgttaaacctctcacttacctcaatcgacttgaacgttaaattgtttgtaagt |
214 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
187502 |
cccatgctataaacatcttcattatgagaaatgtacacgtttcgttatgttaaacctctcacttacctcaatcgacttgaacgttaaattgtttgtaggt |
187403 |
T |
|
| Q |
215 |
atcacaccgttatgagtcatgcttccatcaactccgatt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
187402 |
atcacaccgttatgagtcatgcttccatcaactccgatt |
187364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University