View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11709_low_11 (Length: 251)
Name: NF11709_low_11
Description: NF11709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11709_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 38454422 - 38454665
Alignment:
| Q |
1 |
ttctaagttctaacaagcaagggaagagagaagtatgggaaacatatgcagataattaataaaaaccaaaatcaatataaaccatcgtatgatgcctcta |
100 |
Q |
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| T |
38454422 |
ttctaagttctaacaagcaagggaagagagaagtatgggaaacatatgcagataattaataaaaaccaaaatcaatataaaccatcgtatgatgcctcta |
38454521 |
T |
|
| Q |
101 |
ccaacacagaagagcattaattaaaataaataaataatagcaacgtttctacnnnnnnnnnggtacataacgttgctactttctaccaacacagaaaaca |
200 |
Q |
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| T |
38454522 |
ccaacacagaagagcattaattaaaataaataaataatagcaacgttgctactttttttttggtacataacgttgctactttctaccaacagagaaaaga |
38454621 |
T |
|
| Q |
201 |
aactacagtacagggtaaagtggtttgcgtttgcccctttgctt |
244 |
Q |
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||||||||||||| |||||||||||||||||| |||| |||||| |
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| T |
38454622 |
aactacagtacagagtaaagtggtttgcgtttaccccattgctt |
38454665 |
T |
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