View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11709_low_14 (Length: 229)
Name: NF11709_low_14
Description: NF11709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11709_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 31875862 - 31876085
Alignment:
| Q |
1 |
ctacttgttctcttgatgctgtccagcttgtttctgtcttaactttttcagctgagaatttattgtcaatgcatataatgcttgaacaatattgcaaaca |
100 |
Q |
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| T |
31875862 |
ctacttgttctcttgatgctgtccagcttgtttctgtcttgactttttcagctgagaatttattgtcaatgcatataatgcttgaacaatattgcaaaca |
31875961 |
T |
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| Q |
101 |
ttgtatatatgtttacattaggtttttgaagaattaatgtgtttcagcattaccttggtagattcatgagcaaaatatgtttgaccaagcatcacatata |
200 |
Q |
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| T |
31875962 |
ttgtatatatatttacattaggtttttgaagaattaatgtgtttcagcattaccttggtagactcatgagcaaaatatgtttgaccaagcatcacatata |
31876061 |
T |
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| Q |
201 |
agtagccaacagaatgataaaatt |
224 |
Q |
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| T |
31876062 |
agtagccaacagaatgataaaatt |
31876085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 31584271 - 31584363
Alignment:
| Q |
107 |
atatgtttacattaggtttttgaagaattaatgtgtttcagcattaccttggtagattcatgagcaaaatatgtttgaccaagcatcacatat |
199 |
Q |
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| T |
31584271 |
atatatttacattaggattttgatgaattaatgtgtttcagcattaccttggcggattcatgcgcaaagtatttttgcctaagcatcacatat |
31584363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 31550626 - 31550546
Alignment:
| Q |
1 |
ctacttgttctcttgatgctgtccagcttgtttctgtcttaactttttc--agctgagaatttattgtcaatgcatataat |
79 |
Q |
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| T |
31550626 |
ctacatgttctcttgatacagtccagcctgtttctgtcttgatttgttctcagctgagaatttattatcaatgcatataat |
31550546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 199
Target Start/End: Complemental strand, 31550491 - 31550406
Alignment:
| Q |
114 |
tacattaggtttttgaagaattaatgtgtttcagcattaccttggtagattcatgagcaaaatatgtttgaccaagcatcacatat |
199 |
Q |
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| T |
31550491 |
tacattaggattttgaagagttaacgtgttttggcattaccttggcagactcatgagcaaagtgtttttgcctaagcatcgcatat |
31550406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 18230903 - 18230834
Alignment:
| Q |
84 |
gaacaatattgcaaacattgtatatatgtttacattaggtttttgaagaattaatgtgtttcagcattacctt |
156 |
Q |
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| T |
18230903 |
gaacaatattgcagataatgtatatat--ttgcataaggattttgaagaatta-tgtgtttcagcattacctt |
18230834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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