View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11709_low_15 (Length: 227)
Name: NF11709_low_15
Description: NF11709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11709_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 34796739 - 34796542
Alignment:
| Q |
17 |
gacatcaacaacacgacagaacacatgagaaggaatattatccgaaaaagataacggaaaatcatgaagatgttccaagtgtccttgagggaagtaaaca |
116 |
Q |
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| T |
34796739 |
gacatcaacaacacgacagaacacatgagaaggaatattatccgaaaaagataacggaaaatcatgaagatgttccaagtgtccttgagggaagtaaaca |
34796640 |
T |
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| Q |
117 |
acaacacttcctttctttggcaaagagatcataggaccagcacaagcatgccatagctccaaacacacagaagaagcagcaccaacactacctatgct |
214 |
Q |
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| T |
34796639 |
acaacacttcctttctttggcaaagagatcataggaccagcacaagcatgccatagctccaaacacacagaagaaccagcaccaacactacctatgct |
34796542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 22234680 - 22234596
Alignment:
| Q |
87 |
tgttccaagtgtccttgagggaagtaaacaacaacacttcctttctttggcaaagagatcataggaccagcacaagcatgccata |
171 |
Q |
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| T |
22234680 |
tgttccaagtgaccttgtggaaaatacaccacaacatttcctttcttaggaagtgaggtaagaggaccagcacaagcatgccata |
22234596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 4274417 - 4274533
Alignment:
| Q |
72 |
ggaaaatcatgaagatgttccaagtgtccttgagggaagtaaacaacaacacttcctttctttggcaaagagatcataggaccagcacaagcatgccata |
171 |
Q |
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| T |
4274417 |
ggaaaatcatgagcttgttcaaagtgtccttgtggaacataaacaacaatgcttcctttctttggtaaagagatcaaaggaccagcacaagcatgccata |
4274516 |
T |
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| Q |
172 |
gctccaaacacacagaa |
188 |
Q |
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| T |
4274517 |
gctccaaacaaacagaa |
4274533 |
T |
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