View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11709_low_4 (Length: 426)

Name: NF11709_low_4
Description: NF11709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11709_low_4
NF11709_low_4
[»] chr7 (8 HSPs)
chr7 (11-390)||(48009540-48009920)
chr7 (64-238)||(35791516-35791690)
chr7 (63-230)||(5782856-5783026)
chr7 (64-238)||(31320246-31320420)
chr7 (110-178)||(48488571-48488639)
chr7 (94-173)||(21948558-21948637)
chr7 (94-176)||(5783332-5783414)
chr7 (94-176)||(35791079-35791161)
[»] chr2 (8 HSPs)
chr2 (94-227)||(36599969-36600103)
chr2 (94-192)||(2280961-2281061)
chr2 (95-174)||(18112897-18112976)
chr2 (94-178)||(16112948-16113032)
chr2 (97-177)||(16113497-16113576)
chr2 (95-207)||(16319531-16319643)
chr2 (94-176)||(36599526-36599608)
chr2 (137-176)||(2280526-2280565)
[»] chr1 (8 HSPs)
chr1 (94-208)||(32822946-32823060)
chr1 (63-238)||(34540294-34540474)
chr1 (94-200)||(8123733-8123838)
chr1 (94-194)||(29313769-29313869)
chr1 (95-174)||(47026495-47026574)
chr1 (135-207)||(11650875-11650947)
chr1 (94-174)||(32824254-32824334)
chr1 (94-176)||(34540829-34540911)
[»] chr5 (9 HSPs)
chr5 (63-238)||(19572080-19572257)
chr5 (64-238)||(1919485-1919659)
chr5 (94-208)||(8283123-8283237)
chr5 (96-207)||(33870332-33870443)
chr5 (93-199)||(797757-797863)
chr5 (136-207)||(13348940-13349011)
chr5 (94-177)||(13349357-13349440)
chr5 (94-176)||(1919049-1919131)
chr5 (94-176)||(8283608-8283690)
[»] chr6 (5 HSPs)
chr6 (64-238)||(20969334-20969513)
chr6 (94-208)||(9960807-9960921)
chr6 (95-177)||(10777644-10777726)
chr6 (94-176)||(20968974-20969056)
chr6 (137-176)||(9960396-9960435)
[»] chr4 (7 HSPs)
chr4 (63-238)||(7576050-7576226)
chr4 (94-199)||(43005855-43005960)
chr4 (94-178)||(25163833-25163917)
chr4 (94-173)||(43005505-43005584)
chr4 (94-172)||(29864907-29864985)
chr4 (62-169)||(28104634-28104742)
chr4 (94-173)||(7575621-7575700)
[»] chr3 (4 HSPs)
chr3 (63-238)||(23516453-23516628)
chr3 (108-192)||(7765400-7765485)
chr3 (94-180)||(27152494-27152580)
chr3 (94-176)||(27151970-27152051)
[»] scaffold0127 (2 HSPs)
scaffold0127 (66-238)||(23058-23235)
scaffold0127 (94-176)||(23519-23601)
[»] chr8 (5 HSPs)
chr8 (63-238)||(7939676-7939852)
chr8 (94-207)||(4285664-4285777)
chr8 (94-174)||(43723765-43723845)
chr8 (93-176)||(7940208-7940291)
chr8 (94-176)||(4285134-4285215)
[»] scaffold0388 (2 HSPs)
scaffold0388 (307-348)||(14091-14132)
scaffold0388 (244-332)||(14190-14274)


Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 11 - 390
Target Start/End: Original strand, 48009540 - 48009920
Alignment:
Q  11 tgagatgaaaacaaaagtgaagaaatgttgaactagaacagggatttataagagggtgttgctaaccggtgccc-gaggtattcgttaaggaacaataat 109  Q
    |||| |||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||| || | ||||||||| ||||||    
T  48009540 tgagttgaaaataaaagtgaagaaatgttgaactagaac-ggaatttataagagggtgttgctaaccggtgccccgagttactggttaaggaataataat 48009638  T
Q  110 attaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaaaatgctacatttaatactatttaaaaagatacc 209  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  48009639 attaatgtgttttatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaatagaaaaatgctacatttaatactatttaaaaagatacg 48009738  T
Q  210 c-acctttcatttgtttttcttgtcaacttaatgtattaaatttgtttccattttttaagactaattaatgtacattttacagtaattgccaatctatac 308  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48009739 ctacctttcatttgtttttcttgtcaacttaatgtattaaatttgtttccattttttaagactaattaatgtacattttacagtaattgccaatctatac 48009838  T
Q  309 acggtgtaaatatacgaacatttactgtgtaattaatctatacaggtgtaaatatacgaaaacttatgatttttaattcctt 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48009839 acggtgtaaatatacgaacatttactgtgtaattaatctatacaggtgtaaatatacgaaaacttatgatttttaattcctt 48009920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 64 - 238
Target Start/End: Complemental strand, 35791690 - 35791516
Alignment:
Q  64 gggtgttgctaaccggtgccc--gaggtattcgttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaact 161  Q
    |||||||||||||||||||||  | || | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35791690 gggtgttgctaaccggtgcccccggggcactggttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaaca 35791591  T
Q  162 taattaaaataggaaaatgctacatttaatactatttaaaaagatac-ccacctttcatttgtttttcttgtcaactt 238  Q
    ||||||||||| |||||  || ||||||||||| ||   |||||||| |  ||||||||||||| ||||||| |||||    
T  35791590 taattaaaataagaaaacactgcatttaatactctt---aaagatacacttcctttcatttgttattcttgtgaactt 35791516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 63 - 230
Target Start/End: Original strand, 5782856 - 5783026
Alignment:
Q  63 agggtgttgctaaccggtgcccg--aggtattcgttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaac 160  Q
    |||||||||||||||||||| |   ||| | | |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  5782856 agggtgttgctaaccggtgctctcaaggcactggttaaggaacaataatattaatgtgtctcatttaattttattgaattaaagtgaaaagtttatcaac 5782955  T
Q  161 ttaattaaaataggaaaatgctacatttaatactatttaaaaagatac-ccacctttcatttgtttttctt 230  Q
    ||||||||||||| |||| ||| ||||||||| | |||| |||||||| |  |||||||||| ||||||||    
T  5782956 ttaattaaaatagaaaaacgctgcatttaatattctttagaaagatacgcttcctttcatttttttttctt 5783026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 64 - 238
Target Start/End: Complemental strand, 31320420 - 31320246
Alignment:
Q  64 gggtgttgctaaccggtgccc--gaggtattcgttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaact 161  Q
    |||||||||||||||||||||  | || | | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  31320420 gggtgttgctaaccggtgcccccggggcactggttaaggaacaataatattaatgtgtctcatttaatttcattcaagtaaagtgaaaagtttatcaaca 31320321  T
Q  162 taattaaaataggaaaatgctacatttaatactatttaaaaagatac-ccacctttcatttgtttttcttgtcaactt 238  Q
    ||||||||||| |||||  || ||||||||||| ||   |||||||| |  ||||||||||||| ||||||| |||||    
T  31320320 taattaaaataagaaaacactgcatttaatactctt---aaagatacacttcctttcatttgttattcttgtgaactt 31320246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 48488571 - 48488639
Alignment:
Q  110 attaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaaaa 178  Q
    ||||||| ||||||||||||||  |||||||||| | ||||| | ||||||||||||||||||||||||    
T  48488571 attaatgagtctcatttaatttacttcaattaaaataaaaagataatcaacttaattaaaataggaaaa 48488639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 21948637 - 21948558
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaatag 173  Q
    ||||||||||||||| ||| | | ||||||||||||||  |||||||||| ||||||| |  ||||||||||||||||||    
T  21948637 gttaaggaacaataaaattgacgagtctcatttaatttacttcaattaaaatgaaaagatagtcaacttaattaaaatag 21948558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 5783414 - 5783332
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaa 176  Q
    ||||||||||||||| ||||||   |  || |||||||  || |||||||||||||||||  |||||||||||||||||||||    
T  5783414 gttaaggaacaataaaattaattgattccacttaatttattttaattaaagtgaaaagttggtcaacttaattaaaataggaa 5783332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 35791079 - 35791161
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaa 176  Q
    ||||||||||||||| ||||||  ||  || |||||||  || |||||||| ||||| ||  |||||||||||||||||||||    
T  35791079 gttaaggaacaataaaattaattagttccacttaatttactttaattaaagggaaaaattggtcaacttaattaaaataggaa 35791161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 94 - 227
Target Start/End: Complemental strand, 36600103 - 36599969
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaaaatgctacatttaatac 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||     
T  36600103 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaatagaaaaatgctgcatttaatat 36600004  T
Q  194 tatttaaaaagatac-ccacctttcatttgttttt 227  Q
    | |||| |||||||| |  ||||||||||||||||    
T  36600003 tctttagaaagatacgcttcctttcatttgttttt 36599969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 2281061 - 2280961
Alignment:
Q  94 gttaaggaacaataatattaatgt--gtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaaaatgctacatttaat 191  Q
    |||||| |||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  2281061 gttaagaaacaataatattaatgtacgtttcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaatagaaaaatgctgcatttaat 2280962  T
Q  192 a 192  Q
    |    
T  2280961 a 2280961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 18112976 - 18112897
Alignment:
Q  95 ttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaatagg 174  Q
    |||||||||||||| ||| ||| ||||||||||||||  |||||||||| ||||||| |  |||||||||||||||||||    
T  18112976 ttaaggaacaataaaattgatgagtctcatttaatttacttcaattaaaatgaaaagatagtcaacttaattaaaatagg 18112897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 16112948 - 16113032
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaaaa 178  Q
    ||||| ||||||||  ||||||| ||| ||||||||||  |||||| |||||||||||||  ||||||||||||||||| |||||    
T  16112948 gttaaagaacaatataattaatgcgtcccatttaatttatttcaatcaaagtgaaaagttagtcaacttaattaaaataagaaaa 16113032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 16113576 - 16113497
Alignment:
Q  97 aaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaaa 177  Q
    |||||||||||  ||||||||||| |||||||||    ||||||||| |||||||||  ||||||||||||||||||||||    
T  16113576 aaggaacaatataattaatgtgtcccatttaattaacctcaattaaa-tgaaaagttagtcaacttaattaaaataggaaa 16113497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 207
Target Start/End: Complemental strand, 16319643 - 16319531
Alignment:
Q  95 ttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaaaatgctacatttaatact 194  Q
    ||||| |||||||  ||||||| ||| ||||||||||   ||||| |||||||||||||  ||||||||||||||||| || ||  || ||||||||| |    
T  16319643 ttaagaaacaatataattaatgcgtcccatttaatttatctcaatcaaagtgaaaagttagtcaacttaattaaaataagataacactgcatttaatatt 16319544  T
Q  195 atttaaaaagata 207  Q
     |||| |||||||    
T  16319543 gtttagaaagata 16319531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 36599526 - 36599608
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaa 176  Q
    |||||||| |||||| ||||||  ||  || |||||||  || ||||||||||||||||| ||||| ||||||||||||||||    
T  36599526 gttaaggaccaataaaattaattagttccacttaatttactttaattaaagtgaaaagttgatcaatttaattaaaataggaa 36599608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 2280526 - 2280565
Alignment:
Q  137 aattaaagtgaaaagtttatcaacttaattaaaataggaa 176  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  2280526 aattaaagtgaaaagttggtcaacttaattaaaataggaa 2280565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 32822946 - 32823060
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaaaatgctacatttaatac 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  32822946 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaatagaaaaacgctacatttaatac 32823045  T
Q  194 tatttaaaaagatac 208  Q
    | |||| ||||||||    
T  32823046 tctttagaaagatac 32823060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 63 - 238
Target Start/End: Original strand, 34540294 - 34540474
Alignment:
Q  63 agggtgttgctaaccggtgcccga--ggtattcgttaaggaacaataatattaatgt--gtctcatttaatttcattcaattaaagtgaaaagtttatca 158  Q
    ||||||||||||||||||||||    || | | ||||| |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  34540294 agggtgttgctaaccggtgcccccatggcactggttaaagaacaataatattaatgaacgtctcatttaatttcattcaattaaagtgaaaagtttatca 34540393  T
Q  159 acttaattaaaataggaaaatgctacatttaatactatttaaaaagatac-ccacctttcatttgtttttcttgtcaactt 238  Q
    ||||||||||||||| |||| ||| ||||||||| | |||| |||||||| |  |||||||||| |||||||||| |||||    
T  34540394 acttaattaaaatagaaaaacgctgcatttaatattctttagaaagatacacttcctttcatttttttttcttgtgaactt 34540474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 8123838 - 8123733
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaaaatgctacatttaatac 193  Q
    ||||||||||||||| ||||||| ||||||||||||||  |||||||||||||||||||| |||||||||||| |||||| |||| | | ||||||||||    
T  8123838 gttaaggaacaataaaattaatgagtctcatttaatttacttcaattaaagtgaaaagttaatcaacttaatt-aaatagcaaaacgatgcatttaatac 8123740  T
Q  194 tatttaa 200  Q
    | |||||    
T  8123739 tctttaa 8123733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 29313869 - 29313769
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaaaatgctacatttaatac 193  Q
    ||||||||||||||| ||| ||| ||||||||||||||  |||||||||| ||||||| |  ||||||||||||||||| | ||| ||| |||||| |||    
T  29313869 gttaaggaacaataaaattgatgagtctcatttaatttacttcaattaaaatgaaaagatagtcaacttaattaaaatatggaaacgctgcatttagtac 29313770  T
Q  194 t 194  Q
    |    
T  29313769 t 29313769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 47026495 - 47026574
Alignment:
Q  95 ttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaatagg 174  Q
    |||||||||||||| ||| ||| ||||||||||||||  |||||||||| ||||||| |  |||||||||||||||||||    
T  47026495 ttaaggaacaataaaattgatgagtctcatttaatttacttcaattaaaatgaaaagatagtcaacttaattaaaatagg 47026574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 11650947 - 11650875
Alignment:
Q  135 tcaattaaagtgaaaagtttatcaacttaattaaaataggaaaatgctacatttaatactatttaaaaagata 207  Q
    ||||||||||||||| |||  |||||||||||||| ||||||||||||  |||||||||| |||| |||||||    
T  11650947 tcaattaaagtgaaatgttagtcaacttaattaaattaggaaaatgctgtatttaatactctttagaaagata 11650875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 32824334 - 32824254
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaatagg 174  Q
    ||||||||||||||| ||||||   |  || |||||||  || |||||||||||||||||  |||||||||||||||||||    
T  32824334 gttaaggaacaataaaattaattgattccacttaatttactttaattaaagtgaaaagttggtcaacttaattaaaatagg 32824254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 34540911 - 34540829
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaa 176  Q
    ||||||||||||||| ||||||   |  || |||||||  || |||||||||||||||||  ||| |||||||||||||||||    
T  34540911 gttaaggaacaataaaattaattgattccacttaatttactttaattaaagtgaaaagttggtcatcttaattaaaataggaa 34540829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 63 - 238
Target Start/End: Original strand, 19572080 - 19572257
Alignment:
Q  63 agggtgttgctaaccggtgcc--cgaggtattcgttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaac 160  Q
    |||||||||||||||||||||  ||| | |||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19572080 agggtgttgctaaccggtgcctccgaagcattgattagggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaac 19572179  T
Q  161 ttaattaaaataggaaaatgctacatttaatactatttaaaaagatac-ccacctttcatttgtttttcttgtcaactt 238  Q
    |||||||||||||||||| ||| ||||||||| | |||| ||||||||    |||||||||| |||||||||| |||||    
T  19572180 ttaattaaaataggaaaacgctgcatttaata-tctttagaaagatactattcctttcatttttttttcttgtgaactt 19572257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 64 - 238
Target Start/End: Complemental strand, 1919659 - 1919485
Alignment:
Q  64 gggtgttgctaaccggtgccc--gaggtattcgttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaact 161  Q
    |||||||||||||||||||||  | || | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1919659 gggtgttgctaaccggtgcccccggggcactggttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaaca 1919560  T
Q  162 taattaaaataggaaaatgctacatttaatactatttaaaaagatac-ccacctttcatttgtttttcttgtcaactt 238  Q
    ||||||||||| |||||  || ||||||||||| ||   |||||||| |  ||||||||||||| ||||||| |||||    
T  1919559 taattaaaataagaaaacactgcatttaatactctt---aaagatacacttcctttcatttgttattcttgtgaactt 1919485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 8283123 - 8283237
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaaaatgctacatttaatac 193  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||| ||||||||||    
T  8283123 gttaaggaacaataatatttatgtgtctcatttaatttcattcaattaaagtcaaaagtttatcaacttaattaaaatagaaaaacgctgcatttaatac 8283222  T
Q  194 tatttaaaaagatac 208  Q
    | |||| ||||||||    
T  8283223 tctttagaaagatac 8283237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 33870443 - 33870332
Alignment:
Q  96 taaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaaaatgctacatttaatacta 195  Q
    ||||||||||||  ||||||||||| ||||||||||    |||||| |||||||| ||  |||||||||||||||||||||||   | |||||||||||     
T  33870443 taaggaacaatataattaatgtgtcccatttaatttaccacaattacagtgaaaaattagtcaacttaattaaaataggaaaacattgcatttaatactc 33870344  T
Q  196 tttaaaaagata 207  Q
    |||| |||||||    
T  33870343 tttagaaagata 33870332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 797757 - 797863
Alignment:
Q  93 cgttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaaaatgctacatttaata 192  Q
    ||||||| |||||||  |||||| | || ||||||||||  | ||||||| ||||||||||  ||||||||||||||||||||||| | | |||||||||    
T  797757 cgttaagaaacaatataattaatctatcccatttaatttactacaattaatgtgaaaagttagtcaacttaattaaaataggaaaacgttgcatttaata 797856  T
Q  193 ctattta 199  Q
    || ||||    
T  797857 ctcttta 797863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 13348940 - 13349011
Alignment:
Q  136 caattaaagtgaaaagtttatcaacttaattaaaataggaaaatgctacatttaatactatttaaaaagata 207  Q
    ||||||||||||||| ||  |||| ||||||||||||||||||  || ||||||||||| ||| ||||||||    
T  13348940 caattaaagtgaaaaattagtcaatttaattaaaataggaaaacactgcatttaatactctttgaaaagata 13349011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 13349440 - 13349357
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaaa 177  Q
    ||||||||||||||| ||||||||||| |||||||||    ||||||||| ||||||  |  ||||||||||||| ||||||||    
T  13349440 gttaaggaacaataaaattaatgtgtcccatttaattaacctcaattaaaatgaaaatctggtcaacttaattaacataggaaa 13349357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 1919049 - 1919131
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaa 176  Q
    ||||||||||||||| ||||||  ||  ||||||||||  || |||||||| ||||| ||  |||||||||||||||||||||    
T  1919049 gttaaggaacaataaaattaattagttccatttaatttactttaattaaagggaaaaattggtcaacttaattaaaataggaa 1919131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 8283690 - 8283608
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaa 176  Q
    ||||||||||||||| ||||||   |  || |||||||  || ||||||||||||||||| |||||| |||||||||||||||    
T  8283690 gttaaggaacaataaaattaattgattccacttaatttactttaattaaagtgaaaagttgatcaacctaattaaaataggaa 8283608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 64 - 238
Target Start/End: Complemental strand, 20969513 - 20969334
Alignment:
Q  64 gggtgttgctaaccggtgcccgaggt-attcgttaaggaacaataata---ttaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaa 159  Q
    |||||||||||||||||||||  ||  | | |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20969513 gggtgttgctaaccggtgcccccggacactggttaaggaacaataataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaa 20969414  T
Q  160 cttaattaaaataggaaaatgctacatttaatactatttaaaaagatac-ccacctttcatttgtttttcttgtcaactt 238  Q
    |||||||||||||||||||  ||  |||||||||| |||| |||||||| |  ||||||||||||||||||||| |||||    
T  20969413 cttaattaaaataggaaaacactgaatttaatactctttagaaagatacgcttcctttcatttgtttttcttgtaaactt 20969334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 94 - 208
Target Start/End: Complemental strand, 9960921 - 9960807
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaaaatgctacatttaatac 193  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| ||| ||||||||||    
T  9960921 gttaaggaacaataatattaaagtgtctcatttaatttcattcaattaaattgaaaagtttattaacttaattaaaatagaaaaacgctgcatttaatac 9960822  T
Q  194 tatttaaaaagatac 208  Q
    | |||| ||||||||    
T  9960821 tctttagaaagatac 9960807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 10777726 - 10777644
Alignment:
Q  95 ttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaaa 177  Q
    |||||||||||||| || |||  | | || |||||||  |||||||||| | ||||||| |||||||||||||||||||||||    
T  10777726 ttaaggaacaataaaatcaataggccccacttaatttacttcaattaaaattaaaagttgatcaacttaattaaaataggaaa 10777644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 20968974 - 20969056
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaa 176  Q
    ||||||||||||||| ||||||   |  || |||||||  || |||||||||||||||||  |||||||||||||||||||||    
T  20968974 gttaaggaacaataaaattaattgattccacttaatttactttaattaaagtgaaaagttggtcaacttaattaaaataggaa 20969056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 9960396 - 9960435
Alignment:
Q  137 aattaaagtgaaaagtttatcaacttaattaaaataggaa 176  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  9960396 aattaaagtgaaaagttggtcaacttaattaaaataggaa 9960435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 9e-43; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 63 - 238
Target Start/End: Complemental strand, 7576226 - 7576050
Alignment:
Q  63 agggtgttgctaaccggtgcccgaggtattcgttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaactt 162  Q
    ||||||||||||| ||||||||  || |   |||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||| ||    
T  7576226 agggtgttgctaatcggtgccccgggcaccagttaaggaacaataatattaacatgtctcatttaattttattcaattaaagtgaaaagtttatcaattt 7576127  T
Q  163 aattaaaataggaaaatgctacatttaatactatttaaaaagatac-ccacctttcatttgtttttcttgtcaactt 238  Q
    |||||||||||||||| | | ||||||||||| |||| |||||||| |  |||||||||||||||| |||| |||||    
T  7576126 aattaaaataggaaaacgatgcatttaatactctttagaaagatacgcttcctttcatttgttttttttgtgaactt 7576050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 43005960 - 43005855
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaaaatgctacatttaatac 193  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||    
T  43005960 gttaaggaacaataatattaatatgtcttatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaatagaaaaacgctgcatttaatac 43005861  T
Q  194 tattta 199  Q
    | ||||    
T  43005860 tcttta 43005855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 25163917 - 25163833
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaaaa 178  Q
    ||||||||||||||| || |||| | | || |||||||  |||||||||| | ||||||| ||||||||||||||||||| ||||    
T  25163917 gttaaggaacaataaaatcaatgagccccacttaatttacttcaattaaaattaaaagttgatcaacttaattaaaatagaaaaa 25163833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 43005505 - 43005584
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaatag 173  Q
    ||||||||||||||| ||||||   | ||| |||||||  || |||||||||||||||||  ||||||||||||||||||    
T  43005505 gttaaggaacaataaaattaattgatttcacttaatttactttaattaaagtgaaaagttggtcaacttaattaaaatag 43005584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 29864985 - 29864907
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaata 172  Q
    ||||| ||| ||||| ||| ||| ||||||||||||||  |||||||||| ||||||| |  |||||||||||||||||    
T  29864985 gttaaagaataataaaattgatgagtctcatttaatttacttcaattaaaatgaaaagatagtcaacttaattaaaata 29864907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 169
Target Start/End: Complemental strand, 28104742 - 28104634
Alignment:
Q  62 gagggtgttgctaaccggtgccc-gaggtattcgttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaac 160  Q
    ||||||| ||||||||||||||| | || |   |||||| |||||||| ||| ||| |||| |||||||||  |||||||||| ||||||| |  |||||    
T  28104742 gagggtgctgctaaccggtgccccggggcacgggttaagaaacaataaaattgatgagtcttatttaatttatttcaattaaaatgaaaagatagtcaac 28104643  T
Q  161 ttaattaaa 169  Q
    |||||||||    
T  28104642 ttaattaaa 28104634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 7575621 - 7575700
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaatag 173  Q
    ||||||||||||||| ||||||  ||  || |||||||  || ||||||| |||||||||  ||||||||||||||||||    
T  7575621 gttaaggaacaataaaattaattggttccacttaatttactttaattaaaatgaaaagttggtcaacttaattaaaatag 7575700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 63 - 238
Target Start/End: Complemental strand, 23516628 - 23516453
Alignment:
Q  63 agggtgttgctaaccggtgccc--gaggtattcgttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaac 160  Q
    ||||||||||||||||||||||  | || | | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23516628 agggtgttgctaaccggtgcccccggggcactggttaaggaacaataatattaatgtgtctcatttaatttcattcaagtaaagtgaaaagtttatcaac 23516529  T
Q  161 ttaattaaaataggaaaatgctacatttaatactatttaaaaagatac-ccacctttcatttgtttttcttgtcaactt 238  Q
     ||||||||||| |||||  || ||||||||||| ||   |||||||| |  ||||||||||||| ||||||| |||||    
T  23516528 ataattaaaataagaaaacactgcatttaatactctt---aaagatacacttcctttcatttgttattcttgtgaactt 23516453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 7765400 - 7765485
Alignment:
Q  108 atattaatgtgtctcatttaatttc-attcaattaaagtgaaaagtttatcaacttaattaaaataggaaaatgctacatttaata 192  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||| ||  ||||||||    
T  7765400 atattaatgtgtctcatttaattttgattcaattaaagtgaaaagtttatcaacttaattaaaatagaaaaatactgtatttaata 7765485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 27152580 - 27152494
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaaaatg 180  Q
    ||||||||||||||  |||||||  || ||||||||||    ||||||||||||||||||  |||||||||||||||||||||||||    
T  27152580 gttaaggaacaatataattaatgcatcccatttaatttaccacaattaaagtgaaaagttagtcaacttaattaaaataggaaaatg 27152494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 27151970 - 27152051
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaa 176  Q
    ||||||||||||||  ||||||| || ||||||||||    ||||||||| ||||| |||  |||||||||||||||||||||    
T  27151970 gttaaggaacaatataattaatgcgtttcatttaattaatctcaattaaa-tgaaatgttcgtcaacttaattaaaataggaa 27152051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 23058 - 23235
Alignment:
Q  66 gtgttgctaaccggtgcccgag-gtattcgttaaggaacaata---atattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaact 161  Q
    |||||||||||||||||||  | | | ||||||||||||||||   |||||||||| |||||||||||||||||||||||||||  ||||||||||||||    
T  23058 gtgttgctaaccggtgcccccgagcactcgttaaggaacaataataatattaatgtatctcatttaatttcattcaattaaagtctaaagtttatcaact 23157  T
Q  162 taattaaaataggaaaatgctacatttaatactatttaaaaagatac-ccacctttcatttgtttttcttgtcaactt 238  Q
    |||| |||||||||||| | || |||||||||| |||| |||||||| |  ||||||||||||||||||||| |||||    
T  23158 taatcaaaataggaaaacgttaaatttaatactctttagaaagatacgcttcctttcatttgtttttcttgtgaactt 23235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 23601 - 23519
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaa 176  Q
    |||||| |||||||| ||||||  ||  || |||||||  || |||||||||||||||||  |||||||||||||||||||||    
T  23601 gttaagaaacaataaaattaattggttccacttaatttactttaattaaagtgaaaagttggtcaacttaattaaaataggaa 23519  T

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Target: chr8 (Bit Score: 84; Significance: 9e-40; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 63 - 238
Target Start/End: Original strand, 7939676 - 7939852
Alignment:
Q  63 agggtgttgctaaccggtgccc--gaggtattcgttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaac 160  Q
    ||||||||||||||||||||||  | ||||   ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7939676 agggtgttgctaaccggtgccctcggggtaccggttaagggacaataatattaa-gtgtctcatttaatttcattcaattaaagtgaaaagtttatcaac 7939774  T
Q  161 ttaattaaaataggaaaatgctacatttaatactatttaaaaagatac-ccacctttcatttgtttttcttgtcaactt 238  Q
    ||||||||||||| |||| ||  ||||||||| | |||| |||||||| |  |||||||||| |||||||||| |||||    
T  7939775 ttaattaaaatagaaaaacgccgcatttaata-tctttataaagatacgcttcctttcatttttttttcttgtgaactt 7939852  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 94 - 207
Target Start/End: Complemental strand, 4285777 - 4285664
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaaaatgctacatttaatac 193  Q
    ||||||||| ||||  ||||||| ||| ||||||||||    ||||||||||||||||||  ||||||||||||||||||||||| | | ||||||||||    
T  4285777 gttaaggaataatataattaatgcgtcccatttaatttaccacaattaaagtgaaaagttagtcaacttaattaaaataggaaaacgttgcatttaatac 4285678  T
Q  194 tatttaaaaagata 207  Q
    |  ||| |||||||    
T  4285677 tccttagaaagata 4285664  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 43723765 - 43723845
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaatagg 174  Q
    |||||| |||||||| ||| ||| ||||||||||||||  |||||||||| ||||||| |  |||||||||||||||||||    
T  43723765 gttaagcaacaataaaattgatgagtctcatttaatttacttcaattaaaatgaaaagatagtcaacttaattaaaatagg 43723845  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 7940291 - 7940208
Alignment:
Q  93 cgttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaa 176  Q
    |||||||||||||||| ||||||   |  || |||||||  || |||||||||||||| ||  |||||||||||||||||||||    
T  7940291 cgttaaggaacaataaaattaattgattccacttaatttactttaattaaagtgaaaaattggtcaacttaattaaaataggaa 7940208  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 4285134 - 4285215
Alignment:
Q  94 gttaaggaacaataatattaatgtgtctcatttaatttcattcaattaaagtgaaaagtttatcaacttaattaaaataggaa 176  Q
    ||||||||||||||  ||||||||||  |||||||||    ||||||||| ||||| |||  |||||||||||||||||||||    
T  4285134 gttaaggaacaatataattaatgtgttccatttaattaatctcaattaaa-tgaaatgttggtcaacttaattaaaataggaa 4285215  T

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Target: scaffold0388 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 14132 - 14091
Alignment:
Q  307 acacggtgtaaatatacgaacatttactgtgtaattaatcta 348  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14132 acacggtgtaaatatacgaacatttactgtgtaattaatcta 14091  T

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Target: scaffold0388; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 14274 - 14190
Alignment:
Q  244 attaaatttgtttccattttttaagactaa-ttaatgtacattttacagtaattgccaatctatacacggtgtaaatatacgaacattta 332  Q
    |||||||||||||| |||||||||| |||| |||||||||||||||     |||||| | || |||||||||||||||||||||||||||    
T  14274 attaaatttgtttctattttttaagtctaaattaatgtacatttta-----attgcctaactgtacacggtgtaaatatacgaacattta 14190  T

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