View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11709_low_5 (Length: 323)
Name: NF11709_low_5
Description: NF11709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11709_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 388927 - 388636
Alignment:
| Q |
17 |
catcacaaatcatgacattcatagcttcaccaattctgtcagaggcaacaacatcacaggaatatcacagttcaaaagatacctatctcgtttcgggtac |
116 |
Q |
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| T |
388927 |
catctcaaatcatgacattcatagcttcaccaatgctgtcagaggcaacaacatcacaggaatatcacagttcaaaagatacctatctcgtttcgggtac |
388828 |
T |
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| Q |
117 |
attaaaaacaatgacacattcagcgacaaatttgattcgaattttgaatcagctatcatcaaataccaaagaaatcttggactccaagtaaccggtaaac |
216 |
Q |
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| T |
388827 |
attaaaaacaatgacacattcagcgacaaatttgattcgaattttgaatcagctatcatcaaataccaaagaaatcttggactccaagtaaccggtaaac |
388728 |
T |
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| Q |
217 |
tcgattcgaacacagtttctc-aatgatcacaccaagatgcggtgttccagacacaacaaaaactcatcattatcataatcaccatcaaaat |
307 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
388727 |
tcgattcgaatacagtttctcaaatgatcacaccaagatgcggtgttccagacacaacaaaaactcatcattatcataatcaccatcaaaat |
388636 |
T |
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