View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1170_high_16 (Length: 319)

Name: NF1170_high_16
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1170_high_16
NF1170_high_16
[»] chr7 (1 HSPs)
chr7 (8-298)||(33504845-33505135)


Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 8 - 298
Target Start/End: Original strand, 33504845 - 33505135
Alignment:
Q  8 tatcataggataacctactaaatgaaccattattgatctcttcctctatgttacggcacatttgagttagagccttcccactaccaaattcaactaaatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33504845 tatcataggataacctactaaatgaaccattattgatctcttcctctatgttacggcacatttgagttagagccttcccactaccaaattcaactaaatt 33504944  T
Q  108 tttgcaatagtttcctgcatctggagtccatccttgttcaaaatcttccaccaatttctctaccgagattttcagtttcctaataatttagtaaccaaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33504945 tttgcaatagtttcctgcatctggagtccatccttgttcaaaatcttccaccaatttctctaccgagatttccagtttcctaataatttagtaaccaaaa 33505044  T
Q  208 tattaattaatatttgcatatatagttaacatgcatagtaataagaaaaatatacaatctataaagcatagactcaaacacggacaccaga 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33505045 tattaattaatatttgcatatatagttaacatgcatagtaataagaaaaatatacaatctataaagcatagactcaaacacggacaccaga 33505135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University