View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1170_high_2 (Length: 770)
Name: NF1170_high_2
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1170_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 627; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 13 - 674
Target Start/End: Complemental strand, 41756914 - 41756253
Alignment:
| Q |
13 |
aatattcaactgatcctaacaattatatgagcaacatttgatcgctattctcctcaatattgaagatcacgaccacggtaaactttggttagtaagtaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41756914 |
aatattcaactgatcctaacaattatatgagcaacatttgatcgctattctcctcaatattgaagatcacgaacacggtaaactttggttagtaagtaat |
41756815 |
T |
|
| Q |
113 |
tgttcctctcaaatagagaatgcatggactaagatttttaagagatagtgatgtacatacccaatcatggcaagaaagcatgaaatgatcagctccaagg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41756814 |
tgttcctctcaaatagagaatgcatggactaagatttttaagagatagtgatgtacatacccaatcatggcaagaaagcatgaaatgatcagctccaagg |
41756715 |
T |
|
| Q |
213 |
cttcggttccaaaagggatatttttcggaaaccacattgatataatctgtgatggttttccttatgggactaaaatcatgagaatcgcgtacatagacaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41756714 |
cttcggttccaaaagggatatttttcggaaaccacattgatataatctgtgatggttttccttatgggactaaaatcatgagaatcgcgtacatagacaa |
41756615 |
T |
|
| Q |
313 |
attggaccatctttgccacactaaaaggaaggaaaaatacatgtgccttctcggggtctcttgttcgaaatcgatcattcatctcaatagcatggatgaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41756614 |
attggaccatctttgccacactaaaaggaaggaaaaatacatgtgccttctcggggtctcttgttcgaaatcgatcattcatctcaatagcatggatgaa |
41756515 |
T |
|
| Q |
413 |
atttccttccatggagtatatacttttgcaaggtccattatggaaaaccggaggctccccttcttcatacacaaatactttgaattgtttctccatttct |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41756514 |
atttccttccatggagtatatacttttgcaaggtccattatggaaaaccggaggctccccttcttcatacacaaatactttgaattgtttctccatttct |
41756415 |
T |
|
| Q |
513 |
aaataactcctgttatataacaaatagcaatttggcgaagtaaggtgagtgaatcgtatcaagccaatcaaatgtaattatgttagtaaaatgttttaga |
612 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41756414 |
aaataactcctgttatataacaaataacaatttggcgaagtaaggtgagtgaatcgtatcaagccaatcaaatgtaattatgttagtaaaatgttttaga |
41756315 |
T |
|
| Q |
613 |
tatnnnnnnnnntgttatgcaatatttacctgtgaaatgaattaggattgtgatacattggt |
674 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41756314 |
tataaaaaaaaatgttatgcaatatttacctgtgaaatgaattaggattgtgatacattggt |
41756253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 170 - 532
Target Start/End: Complemental strand, 41764699 - 41764337
Alignment:
| Q |
170 |
tacccaatcatggcaagaaagcatgaaatgatcagctccaaggcttcggttccaaaagggatatttttcggaaaccacattgatataatctgtgatggtt |
269 |
Q |
| |
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||||||||||||||||| ||| |||||||||||||||||| | |||||||||||| |||||||||||||||||| |||||||| || ||| ||| |||| |
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| T |
41764699 |
tacccaatcatggcaagcaagtatgaaatgatcagctccatgacttcggttccaatagggatatttttcggaaaggacattgatgtagtctttgacggtt |
41764600 |
T |
|
| Q |
270 |
ttccttatgggactaaaatcatgagaatcgcgtacatagacaaattggaccatctttgccacactaaaaggaaggaaaaatacatgtgccttctcggggt |
369 |
Q |
| |
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|||||| | | | || || |||| || |||||||||||| | ||||||||| |||| |||||| ||| |||||||||||||||||||||||| |||| |
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| T |
41764599 |
atccttaagaggtcataagcacgagagtctcgtacatagacataatggaccatcattgctacactataagaaaggaaaaatacatgtgccttctcagggt |
41764500 |
T |
|
| Q |
370 |
ctcttgttcgaaatcgatcattcatctcaatagcatggatgaaatttccttccatggagtatatacttttgcaaggtccattatggaaaaccggaggctc |
469 |
Q |
| |
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|| ||||| ||| |||||||||||| || || ||||||| |||||||||||||||||||| | |||||||||||| ||||||||| |||||||| |
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| T |
41764499 |
cttttgttatgaatttatcattcatctccatttgattgatgaaaattccttccatggagtatatatctctgcaaggtccatcatggaaaactggaggctc |
41764400 |
T |
|
| Q |
470 |
cccttcttcatacacaaatactttgaattgtttctccatttctaaataactcctgttatataa |
532 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| |||| |
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| T |
41764399 |
cccttcttcgtacacaaatactttgaaccgtttctccatttctaagtaactcctgttaaataa |
41764337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 9e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 171 - 525
Target Start/End: Original strand, 26973807 - 26974161
Alignment:
| Q |
171 |
acccaatcatggcaagaaagcatgaaatgatcagctccaaggcttcggttccaaaagggatatttttcggaaaccacattgatataatctgtgatggttt |
270 |
Q |
| |
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||||| |||||||||| |||||||||||||||||||||||||||| |||||| | ||||||||| | | || |||||||||||||| |||| |||| |
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| T |
26973807 |
acccagtcatggcaagctagcatgaaatgatcagctccaaggcttctattccaatatggatattttccagcaatgacattgatataatccgtgacagttt |
26973906 |
T |
|
| Q |
271 |
tccttatgggactaaaatcatgagaatcgcgtacatagacaaattggaccatctttgccacactaaaaggaaggaaaaatacatgtgccttctcggggtc |
370 |
Q |
| |
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| ||||| || | ||| ||| |||| || | || ||| || ||| |||||| | || ||||||| || ||||||||| | || ||||| |||| || || |
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| T |
26973907 |
ttcttataggtccaaagtcacgagagtcccttaaataaacgaatcggaccaacattaccacactgaacggaaggaaatagacgtgtgctttctgaggatc |
26974006 |
T |
|
| Q |
371 |
tcttgttcgaaatcgatcattcatctcaatagcatggatgaaatttccttccatggagtatatacttttgcaaggtccattatggaaaaccggaggctcc |
470 |
Q |
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||| |||| |||| | ||||||| ||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |
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| T |
26974007 |
tctagttctaaattggtcattcaattcaatagcatgaatgaagttcccttccatggagtatatgcttttgcaaggtccattgtgaaaaaccggaggctcc |
26974106 |
T |
|
| Q |
471 |
ccttcttcatacacaaatactttgaattgtttctccatttctaaataactcctgt |
525 |
Q |
| |
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|||||||| || || ||||||||||| ||||||||||||||||| || ||||||| |
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| T |
26974107 |
ccttcttcgtagacgaatactttgaactgtttctccatttctaagtagctcctgt |
26974161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 26980205 - 26980250
Alignment:
| Q |
387 |
tcattcatctcaatagcatggatgaaatttccttccatggagtata |
432 |
Q |
| |
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||||||| || |||| |||||||||| ||||||||||||||||||| |
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| T |
26980205 |
tcattcaacttaataacatggatgaagtttccttccatggagtata |
26980250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 36806159 - 36806120
Alignment:
| Q |
170 |
tacccaatcatggcaagaaagcatgaaatgatcagctcca |
209 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||| |
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| T |
36806159 |
tacccaatcatgacaagaaagcatgaaatgatcagctcca |
36806120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 36515067 - 36515106
Alignment:
| Q |
170 |
tacccaatcatggcaagaaagcatgaaatgatcagctcca |
209 |
Q |
| |
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|||||||||||| ||||||||||||||||| ||||||||| |
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| T |
36515067 |
tacccaatcatgacaagaaagcatgaaatggtcagctcca |
36515106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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