View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1170_high_24 (Length: 278)
Name: NF1170_high_24
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1170_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 38108281 - 38108086
Alignment:
| Q |
13 |
acagctgagaagagtaatcctttctctctgttcattttgattggattcatgaaagnnnnnnnnnnnggaaagaagttgaaatatatggagcattgagaga |
112 |
Q |
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| T |
38108281 |
acagctgagaagagtaatcctttgtctctgttcattttgattggattcatgaaagaaaaaaaaaaaggaaagaagttgaaatatatggagcattgagaga |
38108182 |
T |
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| Q |
113 |
agaaaccataaaccaagactattcaaaattattagtataatttggagtttagaatggctgccagacggttgcttcgttgcgtaggtttccgtttctaatc |
212 |
Q |
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| T |
38108181 |
agaaaccataaaccaagactattcaaaattat---tataatt------------tggctgccagacggttgcttcgttgcgtaggtttccatttctaatc |
38108097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 44255952 - 44255997
Alignment:
| Q |
230 |
tggtgaggcctatgttaccctcttttatttagagtataatctaccc |
275 |
Q |
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| T |
44255952 |
tggtgaggcctaggttaccctctcttatttagaggataatttaccc |
44255997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 38577264 - 38577232
Alignment:
| Q |
231 |
ggtgaggcctatgttaccctcttttatttagag |
263 |
Q |
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| T |
38577264 |
ggtgaggcctacgttaccctcttttatttagag |
38577232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 12499212 - 12499245
Alignment:
| Q |
230 |
tggtgaggcctatgttaccctcttttatttagag |
263 |
Q |
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| T |
12499212 |
tggtgaggcctatgttaccctcttttgtttagag |
12499245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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