View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1170_high_26 (Length: 265)

Name: NF1170_high_26
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1170_high_26
NF1170_high_26
[»] chr4 (10 HSPs)
chr4 (35-152)||(44883976-44884093)
chr4 (34-141)||(44866113-44866220)
chr4 (34-142)||(44851787-44851895)
chr4 (34-142)||(44900701-44900809)
chr4 (34-135)||(44840312-44840413)
chr4 (206-255)||(44883873-44883922)
chr4 (206-255)||(44866008-44866057)
chr4 (206-255)||(44900589-44900638)
chr4 (209-255)||(44840189-44840235)
chr4 (206-255)||(44851676-44851725)
[»] chr3 (1 HSPs)
chr3 (58-100)||(12924683-12924725)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 35 - 152
Target Start/End: Complemental strand, 44884093 - 44883976
Alignment:
Q  35 cattccataggcaattcctagaagcagggtctaatccggtacttggctcatccatataaacaacctaaatttgaattgtcatttacaaaatacaaaaact 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44884093 cattccataggcaattcctagaagcagggtctaatccggtacttggctcatccatataaacaacctaaatttgaattgtcatttacaaaatacaaaaact 44883994  T
Q  135 tgaatcttcatatttatt 152  Q
    ||||||||||||||||||    
T  44883993 tgaatcttcatatttatt 44883976  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 34 - 141
Target Start/End: Complemental strand, 44866220 - 44866113
Alignment:
Q  34 acattccataggcaattcctagaagcagggtctaatccggtacttggctcatccatataaacaacctaaatttgaattgtcatttacaaaatacaaaaac 133  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44866220 acattccataggcatttccttgaagcagggtctaatccagtacttggttcatccatataaacaacctaaatttgaattgtcatttacaaaatacgaaaac 44866121  T
Q  134 ttgaatct 141  Q
     |||||||    
T  44866120 atgaatct 44866113  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 34 - 142
Target Start/End: Complemental strand, 44851895 - 44851787
Alignment:
Q  34 acattccataggcaattcctagaagcagggtctaatccggtacttggctcatccatataaacaacctaaatttgaattgtcatttacaaaatacaaaaac 133  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||| ||||  |||||    
T  44851895 acattccataggcatttccttgaagcagggtctaatccagtacttggctcatccatataaacaacctaaatttgaattggcatgtacagaataagaaaac 44851796  T
Q  134 ttgaatctt 142  Q
    |||||||||    
T  44851795 ttgaatctt 44851787  T

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Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 34 - 142
Target Start/End: Complemental strand, 44900809 - 44900701
Alignment:
Q  34 acattccataggcaattcctagaagcagggtctaatccggtacttggctcatccatataaacaacctaaatttgaattgtcatttacaaaatacaaaaac 133  Q
    |||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| |||| ||||  |||||    
T  44900809 acattccataggcatttccttgaagcagggtctaatcccgtgcttggctcatccatataaacaacctaaatttgaattggcatgtacagaataagaaaac 44900710  T
Q  134 ttgaatctt 142  Q
    |||||||||    
T  44900709 ttgaatctt 44900701  T

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Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 44840413 - 44840312
Alignment:
Q  34 acattccataggcaattcctagaagcagggtctaatccggtacttggctcatccatataaacaacctaaatttgaattgtcatttacaaaatacaaaaac 133  Q
    |||||||| || || ||||| ||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||| |||||||||||||  |||||    
T  44840413 acattccaaagccatttccttgaagcagggtctaatccagtacttggctcatccaaataaacaatctaaatttgaattggcatttacaaaataagaaaac 44840314  T
Q  134 tt 135  Q
    ||    
T  44840313 tt 44840312  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 44883922 - 44883873
Alignment:
Q  206 ctttggggtccccaatcaatgaaatggcaacactaagcctcctcttcatc 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44883922 ctttggggtccccaatcaatgaaatggcaacactaagcctcctcttcatc 44883873  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 44866057 - 44866008
Alignment:
Q  206 ctttggggtccccaatcaatgaaatggcaacactaagcctcctcttcatc 255  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44866057 ctttggggtccccaatcaatgaaattgcaacactaagcctcctcttcatc 44866008  T

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Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 44900638 - 44900589
Alignment:
Q  206 ctttggggtccccaatcaatgaaatggcaacactaagcctcctcttcatc 255  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44900638 ctttggggtccccaatcaatgaaattgcaacactaagcctcctcttcatc 44900589  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 44840235 - 44840189
Alignment:
Q  209 tggggtccccaatcaatgaaatggcaacactaagcctcctcttcatc 255  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  44840235 tggggtccccaatcaatgaaattgcaacactaagcctcctcttcatc 44840189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 44851725 - 44851676
Alignment:
Q  206 ctttggggtccccaatcaatgaaatggcaacactaagcctcctcttcatc 255  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  44851725 ctttggggtccccaatcaatgaaattgcaacactaagtctcctcttcatc 44851676  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 12924683 - 12924725
Alignment:
Q  58 gcagggtctaatccggtacttggctcatccatataaacaacct 100  Q
    |||||||||||||| |||||||| |||||||||||||||||||    
T  12924683 gcagggtctaatccagtacttggttcatccatataaacaacct 12924725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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