View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1170_high_30 (Length: 228)
Name: NF1170_high_30
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1170_high_30 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 88 - 228
Target Start/End: Complemental strand, 12847072 - 12846932
Alignment:
| Q |
88 |
ccagagcaacaaacgtcaagtatatattgtctccttattacaatgactcgggtactacaatacaatgactgttgttatcactatctattgatggaagtga |
187 |
Q |
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| T |
12847072 |
ccagagcaacaaacgtcaagtatatattgtctccttattacaatgactcgggtactacaatacaatgactgttgttatcactatctattgatggaagtga |
12846973 |
T |
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| Q |
188 |
aacacctaattagtattgatatgaatagcttttctttttgt |
228 |
Q |
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| T |
12846972 |
aacacctaaatagtattgatatgaatagcttttctttttgt |
12846932 |
T |
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Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 32813415 - 32813337
Alignment:
| Q |
6 |
actcttacaattagagatcaataaatgattcttaga-atgatattaggtgcacaatgcttgataatggcatagtataat |
83 |
Q |
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| T |
32813415 |
actcttacaattagagatcaataaatgattcttagatatgatatttggtgcacaatgcttgataatggcatagtataat |
32813337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 32311092 - 32311136
Alignment:
| Q |
6 |
actcttacaattagagatcaataaatgattcttaga-atgatatt |
49 |
Q |
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| T |
32311092 |
actcttacaattagagatcaataaatgattcttagatatgatatt |
32311136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 32792612 - 32792577
Alignment:
| Q |
6 |
actcttacaattagagatcaataaatgattcttaga |
41 |
Q |
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| T |
32792612 |
actcttacaattagagatcaataaatgattcttaga |
32792577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 32790373 - 32790329
Alignment:
| Q |
6 |
actcttacaattagagatcaataaatgattcttaga-atgatatt |
49 |
Q |
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| T |
32790373 |
actcttacaattagagattaataaatgattcttagatatgatatt |
32790329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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