View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1170_high_7 (Length: 455)
Name: NF1170_high_7
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1170_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 30 - 444
Target Start/End: Original strand, 37267338 - 37267758
Alignment:
| Q |
30 |
tctttgacttggaaatgaaacttcctttgcatcattatggacactggtacccttgacacattaaccctcaactttggatgacctttcatgggaactatgg |
129 |
Q |
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| T |
37267338 |
tctttgacttggaaatgaaacttcctttgcatcattatggacactggtacccttgacacattaatcctcaactttggatgacctttcatgggaactatgg |
37267437 |
T |
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| Q |
130 |
cgttgaaaacaattatgctctactaccactaaacttcttcaatcttgtctttacaaaagaaaagaagacgtacgaggtagcagtttctatagttattgtg |
229 |
Q |
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| T |
37267438 |
cgttgaaaacaattatgctctactaccactaaacttcttcaatcttgtctttacaaaagaaaagaagacgtacgaggtagcagtttctatagttattgtg |
37267537 |
T |
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| Q |
230 |
atcgagtggggaagaatatgaggtaagtggggtacaaaattcaacttccaacatactggacaagtgg------ggacgtggacgtgtagcagaaaacata |
323 |
Q |
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| T |
37267538 |
atcgagtggggaagaatatgaggtaagtggggtacaaaattcaacttccaacatactggacaagtggggacgtggacgtggacgtgtagcagaaaacata |
37267637 |
T |
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| Q |
324 |
ggtgttggatgtatgaaaaaacttcaacttccatcgtgaaaaggtttcaccatatagtaggtgattaacttatgtagggaaaattatttgccaataaaat |
423 |
Q |
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| T |
37267638 |
ggtgttggatgtatgaaaaaacttcaacttccatcgtgaaaaggtttcaccatatagtaggtgattaacttatgtagggaaaattatttgccaataaaat |
37267737 |
T |
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| Q |
424 |
atggtataaatatgtcttcat |
444 |
Q |
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| T |
37267738 |
atggtataaatatatcttcat |
37267758 |
T |
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