View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1170_low_10 (Length: 462)
Name: NF1170_low_10
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1170_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 42 - 452
Target Start/End: Original strand, 35610105 - 35610515
Alignment:
| Q |
42 |
tatttcaagtttcagtgagtatactgtggttgacattgccaatgtactaaagattgatccacaaatccctcctgatagggcctgccttctcggttgtggt |
141 |
Q |
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| T |
35610105 |
tatttcaagtttcagtgagtataccgtggttgacattgccaatgtactaaagattgatccacaaatccctcctcatagggcctgccttctcggttgtggt |
35610204 |
T |
|
| Q |
142 |
gtatcgacaggtagtttctttatcaacgcaaaaagtaaatttagaatatagataagaacaatgatggtggtcaattagggtcaaattaattggtcgtgaa |
241 |
Q |
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| T |
35610205 |
gtatcgacaggtagtttctttatcaacgcaaaaagtaaatttagaatatagataagaacaatgatgatggtcaattagggtcaacttaattggtcgtgaa |
35610304 |
T |
|
| Q |
242 |
taaaagagagattgcttgtagtaaaagttaaccacgttaatccaattcaatgttttgaaatcttatttaatagttaaaacttgtatttgtaggggtaggg |
341 |
Q |
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| T |
35610305 |
taaaagaaatattgcttgtagtaaaagttaaccacgttaatccaattcaatgttttgaaatcttatttaatagttaaaacttgtatttgtaggggtaggt |
35610404 |
T |
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| Q |
342 |
gctgcttggagaacagcaggtgtagagccagggtcatcagttgctatatttgggctcggatctgttggattagcagtatggattctctaaaactcagatt |
441 |
Q |
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| T |
35610405 |
gctgcttggagaacagcaggtgtagagccagggtcatcagttgctatatttgggctaggatctgttggattagcagtatgggctctctaaaactcagatt |
35610504 |
T |
|
| Q |
442 |
tgccttctgtg |
452 |
Q |
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| T |
35610505 |
tgccttctgtg |
35610515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 220 - 419
Target Start/End: Original strand, 35614772 - 35614965
Alignment:
| Q |
220 |
ggtcaaattaattggtcgtgaataaaagagagattgcttgtagtaaaagttaaccacgttaatccaattcaatgttttgaaatcttatttaatagttaaa |
319 |
Q |
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| T |
35614772 |
ggtcaaatgaattgatcatgaataaaagaaaggttgcttctattacaagtcaacaatattcatctgattcaatgttttgaaatctt------tattcaaa |
35614865 |
T |
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| Q |
320 |
acttgtatttgtaggggtaggggctgcttggagaacagcaggtgtagagccagggtcatcagttgctatatttgggctcggatctgttggattagcagta |
419 |
Q |
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| T |
35614866 |
acttccatttgtaggggtaggtgctgcttggagaacagcaggtgtggagccagggtctacagtagctatttttggactaggatctattggattagcagta |
35614965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 38029007 - 38028902
Alignment:
| Q |
49 |
agtttcagtgagtatactgtggttgacattgccaatgtactaaagattgatccacaaatccctcctgatagggcctgccttctcggttgtggtgtatcga |
148 |
Q |
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||||| || ||||| ||||||||||||| ||||||| |||| |||||||||||| ||| ||||| | ||||| ||||| ||| ||||||||||||| | |
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| T |
38029007 |
agttttagcgagtacactgtggttgacactgccaatctactcaagattgatccagcaattcctcccaacagggcatgcctcctcagttgtggtgtatcaa |
38028908 |
T |
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| Q |
149 |
caggta |
154 |
Q |
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|||||| |
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| T |
38028907 |
caggta |
38028902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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