View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1170_low_12 (Length: 455)
Name: NF1170_low_12
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1170_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 30 - 441
Target Start/End: Complemental strand, 33388094 - 33387685
Alignment:
| Q |
30 |
atatacacatcatgcatgcattttgctatctgtaaacggtttaggataaactcaaaaaccatctagatttctttaattagaatacacagcctatacatta |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388094 |
atatacacatcatgcatgcattttgctatctgtaaacggtttaggataaactcaaaaaccatctagatttctttaattagaatacacagcctatacatta |
33387995 |
T |
|
| Q |
130 |
tataatcttgacagatattggtccaatgtacgtaacctatttaaaacaagtaacataaaatcccataactatatatnnnnnnnnttgtcacatttaaatt |
229 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33387994 |
ta--atcttgacagatattggtccaatgtacgtaacctatttaaaacaagtaacataaaatcccataactatatataaaaaaaattgtcacatttaaatt |
33387897 |
T |
|
| Q |
230 |
tcattgattaattcatcaattaaattaaacatacaaatcaatatggctgagttgacagaagtttttcccacaggcaaacaatttgatggtttaatgaaca |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33387896 |
tcattgattaattcatcaattaaattaaacatacaaatcaatatggctgagttgacagaagtttttcccacaggcaaacaatttgatggtttaatgcaca |
33387797 |
T |
|
| Q |
330 |
tgtatgtttatgtcataaaatttgatcttccaacatttgtcatgatatgtcttataatcacaatgtttttcttcatattccatcaaattttccatggttt |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33387796 |
tgtatgtttatgtcataaaatttgatcttccaacatttgtcatgatatgtcttataatcacaatgtttttcttcatattccatcaaattttccatggttt |
33387697 |
T |
|
| Q |
430 |
attctattggtt |
441 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33387696 |
attctattggtt |
33387685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University