View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1170_low_13 (Length: 452)
Name: NF1170_low_13
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1170_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Original strand, 33259590 - 33260015
Alignment:
| Q |
19 |
aacaaagattctctcaactgatattccaacctcttttgatcatgttttgaatcttgaattattggaatccatagctgccccacaaggcacatggttaaca |
118 |
Q |
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| T |
33259590 |
aacaaagattctctcaactgatattccaacctcttttgatcatgttttgaatcttgaattattggaatccatagctgccccacaaggcacatggttaaca |
33259689 |
T |
|
| Q |
119 |
actcccctatggttgcttccttccaagtacgtggtatccaacacataattccgattggggctatcacatcatttcattttcacctatttttgtaaattac |
218 |
Q |
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| T |
33259690 |
actcccctatggttgcttccttccaagtacgtggtatccaacacataattccgattgggtctatcacatcatttcattttcacttatttttgtaaattac |
33259789 |
T |
|
| Q |
219 |
atcacaataatatgtcacaaattttgacattaacccatgaactccgtgtttcatttgtgctcgtccttagtctcaacaaatctcactctgtttagatagt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33259790 |
atcacaataatatgtcacaaattttgacattaacccatgaactccgtgtttcatttgtgctcgtccttagtctcaacaaatctcactctgtttagatagt |
33259889 |
T |
|
| Q |
319 |
ttggttgttcaatcagtcacattctcccatcttatggcgacttgattcatttcataaatatctaatttgtggagaaatctcaccgtttatctatttgatc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33259890 |
ttggttgttcaatcagtcacattctcccatcttatggcgacttgattcatttcataaatatctaatttgtggagaaatctcaccgtttatctatttgatc |
33259989 |
T |
|
| Q |
419 |
cgtatggccaagttatttttcttttc |
444 |
Q |
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|||||||||||||||||||||||||| |
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| T |
33259990 |
cgtatggccaagttatttttcttttc |
33260015 |
T |
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