View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1170_low_18 (Length: 379)
Name: NF1170_low_18
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1170_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 350
Target Start/End: Complemental strand, 39029856 - 39029519
Alignment:
| Q |
13 |
aatatttacattttcaatcatatgtaatcaatcactaaaatcactagaaatatttacctttaaccataactgcttttaaagtcacgcatctaatttggtg |
112 |
Q |
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| T |
39029856 |
aatatttacattttcaatcatatgtaatcaatcaccaaaatcactagaaatatttacctttaaccataactgcttttaaagtcacacatgtaatttggtg |
39029757 |
T |
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| Q |
113 |
acagtgcaaaatttgtacactaatcgcgcgtataaaaagtaaattcatataatataaatagatatcttacacaagcgctgaaatttttctttcagctctg |
212 |
Q |
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| T |
39029756 |
acagtgcaaaatttgtacactaatcgcgtgtataaaaagtaaattcatataatataaatagatatcttacacatgcgctgaaatttttctttcagctctg |
39029657 |
T |
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| Q |
213 |
tcttgtgctcactatttgtgatgtggaagtagaagtctggatatgtactctgatccacgcagtttagaggagttgcagtgccgatcgctaacactgtggc |
312 |
Q |
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| T |
39029656 |
tcttgtgctcactatttgtgatgcggaagtagaagtctggatatgtactctgatccacgcagtttagaggatttgcagtgccgatcgctaacactgtggc |
39029557 |
T |
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| Q |
313 |
agggccttcagctctctgtgcctggcggatctcattaa |
350 |
Q |
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| T |
39029556 |
agggccttcagctctctgtgcctggcggatctcattaa |
39029519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 170 - 347
Target Start/End: Original strand, 37859718 - 37859895
Alignment:
| Q |
170 |
atagatatcttacacaagcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgatgtggaagtagaagtctggatatgtactctgatcca |
269 |
Q |
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| T |
37859718 |
atagatatcttacacatgcgctgaaatttttctttgagctcagtcttatgttcactgtttgtgatgcggaaatagtagtcagggtatgtgctctggtcca |
37859817 |
T |
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| Q |
270 |
cgcagtttagaggagttgcagtgccgatcgctaacactgtggcagggccttcagctctctgtgcctggcggatctcat |
347 |
Q |
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| T |
37859818 |
cgcagttttgaggagttgcagtgccgattgccaacacggtggcagggccatcagccctctgtgcctggcggatctcat |
37859895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 174 - 348
Target Start/End: Original strand, 37863712 - 37863886
Alignment:
| Q |
174 |
atatcttacacaagcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgatgtggaagtagaagtctggatatgtactctgatccacgca |
273 |
Q |
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| T |
37863712 |
atatcttacacatgcgctggaatttttctctgagttcagttttgtgttcactgtttgtgatacggaagtaaaagtcaggatatgtactctgatcaacaca |
37863811 |
T |
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| Q |
274 |
gtttagaggagttgcagtgccgatcgctaacactgtggcagggccttcagctctctgtgcctggcggatctcatt |
348 |
Q |
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| T |
37863812 |
gttttgaggatttgcagtgcctattgcgaagacagtggcagggccttcggctctctgtgcctgccgtatctcatt |
37863886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 44128347 - 44128267
Alignment:
| Q |
178 |
cttacacaagcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgatgtggaagtagaagtctggatatgt |
258 |
Q |
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| T |
44128347 |
cttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgt |
44128267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 44132552 - 44132472
Alignment:
| Q |
178 |
cttacacaagcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgatgtggaagtagaagtctggatatgt |
258 |
Q |
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| T |
44132552 |
cttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgt |
44132472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 44140974 - 44140894
Alignment:
| Q |
178 |
cttacacaagcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgatgtggaagtagaagtctggatatgt |
258 |
Q |
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| T |
44140974 |
cttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgt |
44140894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 1491769 - 1491713
Alignment:
| Q |
178 |
cttacacaagcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgat |
234 |
Q |
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| T |
1491769 |
cttacacatgcgttgaaatttttctttgagctcagttttgtgttcgctatttgtgat |
1491713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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