View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1170_low_20 (Length: 371)
Name: NF1170_low_20
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1170_low_20 |
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| [»] scaffold0267 (1 HSPs) |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 7 - 324
Target Start/End: Original strand, 33637303 - 33637620
Alignment:
| Q |
7 |
tccaacaaaataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaatacaaac |
106 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33637303 |
tccaacaaaatagttaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaatacaaac |
33637402 |
T |
|
| Q |
107 |
agttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatat |
206 |
Q |
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| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33637403 |
aattgttgcatagaagcttaatgtggaagaggacggggaaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatat |
33637502 |
T |
|
| Q |
207 |
gttcagctttatcatctctcctattatacataataatatcatcaaaagctcctttgctagccatcaacatgacatttccattttcagagagacaaaccgg |
306 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33637503 |
gttcagctctatcatctctcctattatacatactaatatcatcaaaagctcctttgctagccagcaacatgacatttccattttcagagagacaaaccgg |
33637602 |
T |
|
| Q |
307 |
aaacaaccaatcacctaa |
324 |
Q |
| |
|
||||||||||||| |||| |
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|
| T |
33637603 |
aaacaaccaatcaactaa |
33637620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 32813366 - 32813415
Alignment:
| Q |
318 |
cacctaatatcat-tctaagaatcatttattgatctctaattgtaagagt |
366 |
Q |
| |
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|||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32813366 |
caccaaatatcatatctaagaatcatttattgatctctaattgtaagagt |
32813415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 32311136 - 32311092
Alignment:
| Q |
323 |
aatatcat-tctaagaatcatttattgatctctaattgtaagagt |
366 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
32311136 |
aatatcatatctaagaatcatttattgatctctaattgtaagagt |
32311092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 331 - 366
Target Start/End: Original strand, 32792577 - 32792612
Alignment:
| Q |
331 |
tctaagaatcatttattgatctctaattgtaagagt |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
32792577 |
tctaagaatcatttattgatctctaattgtaagagt |
32792612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 32790329 - 32790373
Alignment:
| Q |
323 |
aatatcat-tctaagaatcatttattgatctctaattgtaagagt |
366 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
32790329 |
aatatcatatctaagaatcatttattaatctctaattgtaagagt |
32790373 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 191
Target Start/End: Complemental strand, 13800 - 13615
Alignment:
| Q |
7 |
tccaacaaaataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aaatacaaa |
105 |
Q |
| |
|
|||||||||||| | |||||||||| ||||||| |||||| ||||||| ||||| |||| | | ||||| |||||||||||||||| ||| ||||| |
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| T |
13800 |
tccaacaaaatagtcaaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcacaacctaacataaattcagaaaaacaaa |
13701 |
T |
|
| Q |
106 |
cagttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgt |
191 |
Q |
| |
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|| |||||||||| || |||||||||| ||||| |||||||||||||||| |||||||||||||||||| | ||||||||||| |
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| T |
13700 |
catttgttgcatacgagattaatgtggacgaggacaaggcaaaaccaagctctgcatatgttcatcagcataacgaatttggttgt |
13615 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 191
Target Start/End: Complemental strand, 3838319 - 3838134
Alignment:
| Q |
7 |
tccaacaaaataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aaatacaaa |
105 |
Q |
| |
|
|||| ||||||| | |||||||||| ||||||| |||||| ||||||| ||||| |||| | | |||| |||||||||||||||| ||| ||||| |
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|
| T |
3838319 |
tccagcaaaatagtcaaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcaaaacctaacataaattcagaaaaacaaa |
3838220 |
T |
|
| Q |
106 |
cagttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgt |
191 |
Q |
| |
|
||||||||||||| || |||||||||| ||||| |||||||||||||||| ||||||||| |||||||| | ||||||||||| |
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|
| T |
3838219 |
cagttgttgcatacgagattaatgtggatgaggacaaggcaaaaccaagctctgcatatgttcctcagcataacgaatttggttgt |
3838134 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 113 - 241
Target Start/End: Complemental strand, 29125230 - 29125102
Alignment:
| Q |
113 |
tgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcag |
212 |
Q |
| |
|
||||||||||||||||| ||| ||||| | ||||||||||| |||| ||||||||||| ||||||| |||||||| || |||||| |||||| | |
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|
| T |
29125230 |
tgcatagaagcttaatgcggatgaggaagaggcaaaaccaaactctacatatgttcatgagcatacataatttggtggttgagaagtctaatatgactaa |
29125131 |
T |
|
| Q |
213 |
ctttatcatctctcctattatacataata |
241 |
Q |
| |
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|| |||||||||||||| ||||||||||| |
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| T |
29125130 |
ctctatcatctctcctactatacataata |
29125102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 29126833 - 29126661
Alignment:
| Q |
10 |
aacaaaataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaata-caaacag |
108 |
Q |
| |
|
||||||||||| ||||||| || |||||||||||||||||| | |||||| ||||||| |||||||| || ||| || ||| |||| | |||| | |
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|
| T |
29126833 |
aacaaaataatcaaactatttaaggaaaacacaattaaggaatattcaatagttatcacaccacttgcacaacttaatgtatattaaaaaaatcaaattg |
29126734 |
T |
|
| Q |
109 |
ttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaa |
182 |
Q |
| |
|
|||||||||||||| |||||| |||| |||| ||||||| |||||| | |||||||||| | ||||||||| |
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|
| T |
29126733 |
ttgttgcatagaagtttaatg-ggaatgagatgaggcaaaatcaagctatgcatatgttcaccgacataccaaa |
29126661 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 13784014 - 13784247
Alignment:
| Q |
9 |
caacaaaataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaatacaaacag |
108 |
Q |
| |
|
|||||||||| | |||||| ||| ||||||||| |||||||||||| |||| |||||| | |||| || || || || ||| ||| ||||||| |
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|
| T |
13784014 |
caacaaaatagtcaaactagctaaggaaaacacatttaaggaaccatcgatagccatcacgccactttcatagtttagcaaaagttctaaaaacaaacaa |
13784113 |
T |
|
| Q |
109 |
ttgttgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgt |
208 |
Q |
| |
|
||| || | || ||||||||||||| ||| ||| |||||||||||||| | |||||||||||| || |||||||| ||||| | ||| || || | | |
|
|
| T |
13784114 |
ttgatgtagaggagcttaatgtggatgagaatgaggcaaaaccaagctatgcatatgttcatcggccgcccaaattttgttgttaggaaattgaagaaat |
13784213 |
T |
|
| Q |
209 |
tcagctttatcatctctcctattatacataataa |
242 |
Q |
| |
|
||| || |||||||||||| |||||||||||||| |
|
|
| T |
13784214 |
tcaactatatcatctctccgattatacataataa |
13784247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 242
Target Start/End: Original strand, 33781 - 33907
Alignment:
| Q |
116 |
atagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctt |
215 |
Q |
| |
|
|||| ||||||||||||| ||||| | |||||||||||||| |||||||||||| || |||||||||||||| | ||||| || | || | || |
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|
| T |
33781 |
ataggagcttaatgtggatgaggacgaggcaaaaccaagctacgcatatgttcatcggccgcccaaatttggttgttaggaagtcgaagaaattgaacta |
33880 |
T |
|
| Q |
216 |
tatcatctctcctattatacataataa |
242 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
33881 |
tatcatctctccgattatacataataa |
33907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 176
Target Start/End: Original strand, 20475663 - 20475806
Alignment:
| Q |
34 |
gaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aaatacaaacagttgttgcatagaagcttaatgtgg |
132 |
Q |
| |
|
||||||||||||||| |||||| ||| || | || | |||| || | |||| ||||||||| ||| | ||| ||||||||||| | |||||||| ||| |
|
|
| T |
20475663 |
gaaaacacaattaagtaaccatcaatcgtaaacatgccacttacataatctaaaataaattcagaaaaataaatagttgttgcattgcagcttaatttgg |
20475762 |
T |
|
| Q |
133 |
aagaggatggggcaaaaccaagctcttcatatgttcatcagcat |
176 |
Q |
| |
|
| |||| | |||||||||||||||| |||||| |||| ||||| |
|
|
| T |
20475763 |
acaaggacgaggcaaaaccaagctctgcatatgctcatgagcat |
20475806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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