View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1170_low_21 (Length: 347)
Name: NF1170_low_21
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1170_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 38091395 - 38091115
Alignment:
| Q |
1 |
ttccataatcatacaagttagggagtcttatacacaattaatcgacgtttgattcgttaattttatgattgtataagaatagtaatgagaaagaataaac |
100 |
Q |
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| T |
38091395 |
ttccataatcgtacaagttagggagtcttatacacaattaattgacgtttgattcgttaattttatgattgtataagaatagtaacgagaaagaataaac |
38091296 |
T |
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| Q |
101 |
tcatgatagatcaaagtgaaattttcctaatactagtggattgatcatttttaggtctttgatatctttctttattacaatttgtatctcataaaccaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38091295 |
tcatgatagatcaaagtgaaattttcctaatactattgaattgatcatttttaggtctttgatatctttctttattacaatttgtatctcataaaccaac |
38091196 |
T |
|
| Q |
201 |
gtagcattccaccgctaacttactcaaaggactttattttctattgaaaagacaatttactctatgaacttttatcattag |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38091195 |
gtagcattccaccgctaacttactcaaaggactttattttctattgaaaagacaatttactctatgaacttttatcattag |
38091115 |
T |
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