View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1170_low_22 (Length: 342)

Name: NF1170_low_22

Description: NF1170

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1170_low_22

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 236; E-Value: 1e-130

Query Start/End: Original strand, 30 - 265

Target Start/End: Original strand, 36509910 - 36510145

Alignment:

Q	30	gaacgaccataaaattattttagaagtaaataaaatttctcaaaagtcaagcgtatttgaagcacccacaatatcatacaaaaattacaaggaaaagcta	129	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36509910	gaacgaccataaaattattttagaagtaaataaaatttctcaaaagtcaagcgtatttgaagcacccacaatatcatacaaaaattacaaggaaaagcta	36510009	T

Q	130	caaaaatatttcaaagtaaacaaaatgaggggatttggattcacggctgtcaattaaaacatgcagtcatgctgtcaatttaatatcaatcgtcggattt	229	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36510010	caaaaatatttcaaagtaaacaaaatgaggggatttggattcacggctgtcaattaaaacatgcagtcatgctgtcaatttaatatcaatcgtcggattt	36510109	T

Q	230	aaccaacagttgagatccagcctttccagtataatc	265	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36510110	aaccaacagttgagatccagcctttccagtataatc	36510145	T

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Target: chr3; HSP #2

Raw Score: 38; E-Value: 0.000000000002

Query Start/End: Original strand, 159 - 220

Target Start/End: Complemental strand, 36510622 - 36510561

Alignment:

Q	159	gggatttggattcacggctgtcaattaaaacatgcagtcatgctgtcaatttaatatcaatc	220	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|
T	36510622	gggatttggattcacggctgtcagttaaatcctgcagtcatgctgtgagtttaacatcaatc	36510561	T

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