View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1170_low_23 (Length: 339)

Name: NF1170_low_23
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1170_low_23
NF1170_low_23
[»] chr2 (4 HSPs)
chr2 (231-339)||(38091376-38091484)
chr2 (12-80)||(43022181-43022249)
chr2 (12-80)||(22349406-22349474)
chr2 (82-124)||(38091592-38091634)
[»] chr7 (3 HSPs)
chr7 (12-80)||(42882088-42882156)
chr7 (12-80)||(47158919-47158987)
chr7 (37-80)||(28317613-28317656)
[»] chr4 (5 HSPs)
chr4 (12-80)||(3529764-3529832)
chr4 (12-80)||(8995253-8995321)
chr4 (12-80)||(40721504-40721572)
chr4 (12-80)||(34198762-34198830)
chr4 (12-80)||(34463046-34463115)
[»] chr3 (4 HSPs)
chr3 (12-80)||(6044836-6044904)
chr3 (12-80)||(32119941-32120009)
chr3 (12-80)||(44084806-44084874)
chr3 (32-80)||(10424186-10424234)
[»] chr1 (2 HSPs)
chr1 (12-80)||(48384682-48384750)
chr1 (12-80)||(31159921-31159990)
[»] chr5 (2 HSPs)
chr5 (12-80)||(19241807-19241875)
chr5 (32-80)||(29616012-29616060)


Alignment Details
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 231 - 339
Target Start/End: Complemental strand, 38091484 - 38091376
Alignment:
Q  231 attgaatccagttgttaggttaattgaggatttgtgacgcctgtttcaaaatcatagttataactgaaatatgtggttttgtgaacttgttccataatca 330  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  38091484 attgaatccagttgttaggttaattgaggatttttgacgcctgtctcaaaatcattgttataactgaaatatgtggttttgtgaacttgttccataatcg 38091385  T
Q  331 tacaagtta 339  Q
    |||||||||    
T  38091384 tacaagtta 38091376  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 43022249 - 43022181
Alignment:
Q  12 agagaggaaatggataaagcaagatacatgacattatgtgattagctgcttggatttttatcttcttaa 80  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  43022249 agagaggaaatggataaagcaagacacatgacattatgtgattggctgcttggatttttatcttcttaa 43022181  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 22349406 - 22349474
Alignment:
Q  12 agagaggaaatggataaagcaagatacatgacattatgtgattagctgcttggatttttatcttcttaa 80  Q
    |||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  22349406 agagaggaaatggataaagcaagacacatggcattatgtgattggctgcttggatttttatcttcttaa 22349474  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 38091634 - 38091592
Alignment:
Q  82 ttatagttttgtggttgtactaactagtgtccctaaactattt 124  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  38091634 ttatagttttgtggttgcactaactagtgtccctaaactattt 38091592  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 42882156 - 42882088
Alignment:
Q  12 agagaggaaatggataaagcaagatacatgacattatgtgattagctgcttggatttttatcttcttaa 80  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  42882156 agagaggaaatggataaagcaagacacatgacattatgtgattggctgcttggatttttatcttcttaa 42882088  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 47158919 - 47158987
Alignment:
Q  12 agagaggaaatggataaagcaagatacatgacattatgtgattagctgcttggatttttatcttcttaa 80  Q
    ||||||||||||||||||| | ||||| || ||||| |||||| ||||||||||||||||| |||||||    
T  47158919 agagaggaaatggataaaggaggatacgtggcattaagtgattggctgcttggatttttattttcttaa 47158987  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 28317613 - 28317656
Alignment:
Q  37 acatgacattatgtgattagctgcttggatttttatcttcttaa 80  Q
    ||||| |||| ||||||| |||||||||||||||||||||||||    
T  28317613 acatggcattttgtgattggctgcttggatttttatcttcttaa 28317656  T

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Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 3529764 - 3529832
Alignment:
Q  12 agagaggaaatggataaagcaagatacatgacattatgtgattagctgcttggatttttatcttcttaa 80  Q
    |||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  3529764 agagaggaaatggataaagcaagacacatggcattatgtgattggctgcttggatttttatcttcttaa 3529832  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 8995321 - 8995253
Alignment:
Q  12 agagaggaaatggataaagcaagatacatgacattatgtgattagctgcttggatttttatcttcttaa 80  Q
    |||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  8995321 agagaggaaatggataaagcaagacacatggcattatgtgattggctgcttggatttttatcttcttaa 8995253  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 40721572 - 40721504
Alignment:
Q  12 agagaggaaatggataaagcaagatacatgacattatgtgattagctgcttggatttttatcttcttaa 80  Q
    ||||||||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  40721572 agagaggaaatggataaaggaagacacatggcattatgtgattggctgcttggatttttatcttcttaa 40721504  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 34198762 - 34198830
Alignment:
Q  12 agagaggaaatggataaagcaagatacatgacattatgtgattagctgcttggatttttatcttcttaa 80  Q
    ||||||||||||||||||| |||| | ||| |||||||||||| |||||||||||||||||||||||||    
T  34198762 agagaggaaatggataaaggaagacagatgtcattatgtgattggctgcttggatttttatcttcttaa 34198830  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 34463046 - 34463115
Alignment:
Q  12 agagaggaaatggataaagcaa-gatacatgacattatgtgattagctgcttggatttttatcttcttaa 80  Q
    ||||||||||||||||||| || || ||||| |||||||||||| |||| || |||||||||||||||||    
T  34463046 agagaggaaatggataaaggaaagacacatggcattatgtgattggctgtttcgatttttatcttcttaa 34463115  T

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Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 6044836 - 6044904
Alignment:
Q  12 agagaggaaatggataaagcaagatacatgacattatgtgattagctgcttggatttttatcttcttaa 80  Q
    |||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  6044836 agagaggaaatggataaagcaagacacatggcattatgtgattggctgcttggatttttatcttcttaa 6044904  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 32119941 - 32120009
Alignment:
Q  12 agagaggaaatggataaagcaagatacatgacattatgtgattagctgcttggatttttatcttcttaa 80  Q
    ||||||||||||||||||| |||| ||||| |||||| ||||| |||||||||||||||||||||||||    
T  32119941 agagaggaaatggataaaggaagacacatggcattatatgattggctgcttggatttttatcttcttaa 32120009  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 44084874 - 44084806
Alignment:
Q  12 agagaggaaatggataaagcaagatacatgacattatgtgattagctgcttggatttttatcttcttaa 80  Q
    ||||||||||||||||||| |||| ||||| |||||| ||||| |||||||||||||||||||||||||    
T  44084874 agagaggaaatggataaaggaagacacatggcattatatgattggctgcttggatttttatcttcttaa 44084806  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 10424186 - 10424234
Alignment:
Q  32 aagatacatgacattatgtgattagctgcttggatttttatcttcttaa 80  Q
    |||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  10424186 aagacacatggcattatgtgattggctgcttggatttttatcttcttaa 10424234  T

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Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 48384682 - 48384750
Alignment:
Q  12 agagaggaaatggataaagcaagatacatgacattatgtgattagctgcttggatttttatcttcttaa 80  Q
    |||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  48384682 agagaggaaatggataaagcaagacacatggcattatgtgattggctgcttggatttttatcttcttaa 48384750  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 31159990 - 31159921
Alignment:
Q  12 agagaggaaatggataaagc-aagatacatgacattatgtgattagctgcttggatttttatcttcttaa 80  Q
    |||||||||||||||||||  |||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  31159990 agagaggaaatggataaagggaagacacatggcattatgtgattggctgcttggatttttatcttcttaa 31159921  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 19241875 - 19241807
Alignment:
Q  12 agagaggaaatggataaagcaagatacatgacattatgtgattagctgcttggatttttatcttcttaa 80  Q
    ||||||||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  19241875 agagaggaaatggataaaggaagacacatggcattatgtgattggctgcttggatttttatcttcttaa 19241807  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 29616012 - 29616060
Alignment:
Q  32 aagatacatgacattatgtgattagctgcttggatttttatcttcttaa 80  Q
    |||| |||||||||  | ||||| |||||||||||||||||||||||||    
T  29616012 aagacacatgacatgttttgattggctgcttggatttttatcttcttaa 29616060  T

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