View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1170_low_25 (Length: 327)
Name: NF1170_low_25
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1170_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 133 - 289
Target Start/End: Complemental strand, 53089964 - 53089819
Alignment:
| Q |
133 |
cgtattgtgaaacttcgtgaacccacttctcgctatataaagcattttcctactcaaattctatggtgcgacatgaatgatagatatactcaaattatta |
232 |
Q |
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| T |
53089964 |
cgtattgtgaaacttcgtgaacccacttctcgctatataaagcattttcctactcaaattctc-----------gaatgatagatatactcaaattatta |
53089876 |
T |
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| Q |
233 |
atcatttggtcagaaaaattaattattgacccgtaggtatgtaaaaagtaaaaacat |
289 |
Q |
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| T |
53089875 |
atcatttggtcagaaaaattaattattgacccgtaggtatgtaaaaagtaaaaacat |
53089819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 325
Target Start/End: Complemental strand, 53089765 - 53089722
Alignment:
| Q |
282 |
aaaaacattttgggcatcttagagattaataaggattatctgac |
325 |
Q |
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| T |
53089765 |
aaaatcattttgggcatcttagagattaattaggattatctgac |
53089722 |
T |
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