View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1170_low_27 (Length: 323)
Name: NF1170_low_27
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1170_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 103 - 239
Target Start/End: Original strand, 39786037 - 39786173
Alignment:
| Q |
103 |
tcaatatccccttgactgagggccactgttcctattattgaacatagaagaggaagcaacattcactttccttggagtttgtgacttaccatcatcataa |
202 |
Q |
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| T |
39786037 |
tcaatatccccttgactgagggccactgttcctattattgaacatagaagaggaagcaacattcactttccttggagtttgtgacttaccatcatcataa |
39786136 |
T |
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| Q |
203 |
taatatgtttcattaatattgttttcaatttcatcac |
239 |
Q |
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| T |
39786137 |
taatatgtttcattaatattgttttcaatttcatcac |
39786173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 268 - 311
Target Start/End: Original strand, 39786211 - 39786254
Alignment:
| Q |
268 |
acccttgttattttggttccctctttccgcatccaattccctat |
311 |
Q |
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| T |
39786211 |
acccttgttattttggttccctctttccgcatccaattccctat |
39786254 |
T |
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