View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1170_low_3 (Length: 639)
Name: NF1170_low_3
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1170_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 11 - 610
Target Start/End: Complemental strand, 24812271 - 24811672
Alignment:
| Q |
11 |
caaaggaaactacatggaatcgcgtccaatatgatgcgattagataagcttaagttccatttcatgaatgatatacaaaatgtcatgatccaaactttga |
110 |
Q |
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| T |
24812271 |
caaaggaaactacatggaatcgcgtccaatatgatgcgattagataagcttaagttccatttcatgaatgatatacaaaatgtcatgatccaaactttga |
24812172 |
T |
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| Q |
111 |
gcaatttcaaaaaccaacaagtaattcttctccaagatgtttgtagaaaggtaacgatccatttactttctaacaacatttttattttcaattatgagaa |
210 |
Q |
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| T |
24812171 |
gcaatttcaaaaaccaacaagtaattcttctccaagatgtttgtagaaaggtaacgatccatttactttctaacaacattttcattttcaattatgagaa |
24812072 |
T |
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| Q |
211 |
atttatcgcggaacatgatttaatgcaggtagctataaatttaatggttaatcaactattaggggtttcaagtgagtctcaagtcaatgaaatggctcag |
310 |
Q |
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| T |
24812071 |
atttatcgcggaacatgatttaatgcaggtagctataaatttaatggttaatcaactattaggggtttcaagtgagtctcaagtcaatgaaatggctcag |
24811972 |
T |
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| Q |
311 |
ttgttttccgatttcgttgatggctgtctatccgttccgatcaacatccctggatcttcataccacactgctatgaaggtacgatgagtaaacttttaga |
410 |
Q |
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| T |
24811971 |
ttgttttccgatttcgttgatggctgtctatctgttccgatcaacatccctggctcttcataccacactgctatgaaggtacgatgagtaaacttttaga |
24811872 |
T |
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| Q |
411 |
ccaaagatatataaagagaatagaattgcaaaaagaaaataaaagagcgttaagaagttggtannnnnnnagctacataacgttgaactacatttcaaag |
510 |
Q |
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| T |
24811871 |
ccaaagatatataaagagaatagaattgcaaaaagaaaacaaaagagcgttaagaagttggtatttttttagctacataacgttgaactacatttcaaag |
24811772 |
T |
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| Q |
511 |
aaattagtttattgttctcatgatcatatccttcaagaaccatcttatatgaagtacttgaaatggtacatttcaaataatactgctagccataattagg |
610 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24811771 |
aaattagtttattgttctcatgatcatatccttcaagaaccatcttatatgaagtacttgaaatggtacatttcaaataatactgctagccgtaattagg |
24811672 |
T |
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