View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1170_low_33 (Length: 292)
Name: NF1170_low_33
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1170_low_33 |
 | |
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| [»] chr5 (3 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0070 (1 HSPs) |
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| [»] chr7 (5 HSPs) |
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| [»] chr8 (5 HSPs) |
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| [»] scaffold0060 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold2006 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 14275840 - 14275545
Alignment:
| Q |
1 |
aactttttgttgccctataagggaggtgatattccgatcatttgtgtcgcatataggtcaat----agggtgttgtgcatttgtcgagtccactggtgtt |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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|
| T |
14275840 |
aactttttgttgccctataagggaggtgatatccaaatcatttgtgtcgcatataggtcaatccttagggtgtcgtgcatttgtcgagtccactggtgtt |
14275741 |
T |
|
| Q |
97 |
tggggtgttgatattttatgtaccttatattaataaatatgctattttaatggtttaaaatacatgttaaatatctaattgtaacttgtatgtttgttgt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
14275740 |
tggggtgttgatattttatgtaccttatattaataattatactattttaatggtttaaaatacatgttaaatatcaatgtgtaacttgtatgtttgttgt |
14275641 |
T |
|
| Q |
197 |
tgtttgggagttgaccctttttccgtatttgaaaatcagatagttatatcaatttacagttgaaagcttcgagagatgtggaccttcggtgcgcct |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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|
| T |
14275640 |
tgtttgggagttgaccctttttccgtatttgaaaatcagataatgatatcaatttacagttagaagcttcgagaaatgtggaccttcggtgcgcct |
14275545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 37626936 - 37626651
Alignment:
| Q |
5 |
ttttgttgccctataagggaggtgatattccgatcatttgtgtcgcatataggtcaa----tagggtgttgtgcatttgtcgagtccactggtgtttggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| || |
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|
| T |
37626936 |
ttttgttgccctataagggaggtgatatccggatcatttgtgtcgcatataggtcaacctttagggtgttgtgcatttgtcgagtccattgttgttttgg |
37626837 |
T |
|
| Q |
101 |
gtgttgatattttatgtaccttatattaataaatatgctattttaatggtttaaaatacatgttaaatatctaat-tgtaacttgtatgtttgttgttgt |
199 |
Q |
| |
|
||||||| | | ||||| ||||||||||| | | |||||| ||| || |||||||||||||||| ||| | |||||||||| ||||| |||| |
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| T |
37626836 |
gtgttgaca-catgtgtactttatattaatatttgtactatttgcatgcctttaaatacatgttaaata---aatgtataacttgtatatttgt--ttgt |
37626743 |
T |
|
| Q |
200 |
ttgggagttgaccctttttccgtatttgaaaatcagatagttatatcaatttacagttgaaagcttcgagagatgtggaccttcggtgcgcct |
292 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| | ||| | |||| |||| | ||| ||||| ||||||||||| ||||||||| |
|
|
| T |
37626742 |
ttgggagttgaccc-ttttccgtatttgaaaatcagataatgataatgacttacggttggaggctccgagatatgtggacctttggtgcgcct |
37626651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 37803477 - 37803245
Alignment:
| Q |
5 |
ttttgttgccctataagggaggtgatattccgatcatttgtgtcgcatataggtcaa----tagggtgttgtgcatttgtcgagtccactggtgtttggg |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||| | || |
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|
| T |
37803477 |
ttttgttgccctctaagggaggtgatatccggatcatttgtgtcgcatataggtcaacatttagggtgttgtgcatttgtcgagtccattgttgtattgg |
37803378 |
T |
|
| Q |
101 |
gtgttgatattttatgtaccttatattaataaatatgctattttaatggtttaaaatacatgttaaatatctaat-tgtaacttgtatgtttgttgttgt |
199 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||| | | |||||| ||| || |||||||||||||||| ||| | |||||||||| ||||| |||| |
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|
| T |
37803377 |
gtgttgacattttgtgtactttatattaatatttgtactatttgcatgcctttaaatacatgttaaata---aatgtataacttgtatatttgt--ttgt |
37803283 |
T |
|
| Q |
200 |
ttgggagttgaccctttttccgtatttgaaaatcagata |
238 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
37803282 |
ttggaagttgaccc-ttttccgtatttgaaaatcagata |
37803245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 11991659 - 11991360
Alignment:
| Q |
1 |
aactttttgttgccctataagggaggtgatattccgatcatttgtgtcgcatataggtcaat----agggtgttgtgcatttgtcgagtccactggtgtt |
96 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| | |||||||||| |||||||||||| ||| ||||||| |||||||||||||||||||||||||| |
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|
| T |
11991659 |
aactttttattgccctataagggagatgatatccggatcatttgtatcgcatataggttaatccttagggtgtcgtgcatttgtcgagtccactggtgtt |
11991560 |
T |
|
| Q |
97 |
tggggtgttgatattttatgtaccttatattaataaatatgctattttaatggtttaaaatacatg----ttaaatatctaattgtaacttgtatgtttg |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
11991559 |
tggggtgttgatattttatgtaccttatattaataattatattgttttaatggtttaaaatacatgcatgttaaatatctatgtgtaacttgtatgtttg |
11991460 |
T |
|
| Q |
193 |
ttgttgtttgggagttgaccctttttccgtatttgaaaatcagatagttatatcaatttacagttgaaagcttcgagagatgtggaccttcggtgcgcct |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||| | ||||| ||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
11991459 |
ttgttgtttgggagttgaccctttttccgtattttaaaattagataatgatatcgatttacagttggaagcttcgagagatgtggacctccggtgcgcct |
11991360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 292
Target Start/End: Original strand, 639403 - 639511
Alignment:
| Q |
183 |
tgtatgtttgttgttgtttgggagttgaccctttttccgtatttgaaaatcagatagttatatcaatttacagttgaaagcttcgagagatgtggacctt |
282 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | | |||| ||| | ||||||||| ||||||||||| |
|
|
| T |
639403 |
tgtatatttgttgttgtttgggagtt-accctttttccgtatttgaaaatcagataaagataacgacttacggtttgaggcttcgagatatgtggacctt |
639501 |
T |
|
| Q |
283 |
cggtgcgcct |
292 |
Q |
| |
|
||||||||| |
|
|
| T |
639502 |
tggtgcgcct |
639511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 41313477 - 41313191
Alignment:
| Q |
5 |
ttttgttgccctataagggaggtgatattccgatcatttgtgtcgcatataggtcaa----tagggtgttgtgcatttgtcgagtccactggtgtttggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || || || || |
|
|
| T |
41313477 |
ttttgttgccctataagggaggtgatatccggatcatttgtgtcgcgtataggtcaacctttagggtgttgtgcatttgtcgagtccattgttgctttgg |
41313378 |
T |
|
| Q |
101 |
gtgttgatattttatgtaccttatattaataaatatgctattttaatggtttaaaatacatgttaaatatctaat-tgtaacttgtatgtttgttgttgt |
199 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||| | | |||||| ||| || |||||||||||||||| ||| | |||||||||| ||||| |||| |
|
|
| T |
41313377 |
gtgttgacattttgtgtactttatattaatatttgtactatttgcatgcctttaaatacatgttaaata---aatgtataacttgtatatttgt--ttgt |
41313283 |
T |
|
| Q |
200 |
ttgggagttgaccctttttccgtatttgaaaatcagatagttatatcaatttacagttgaaagcttcgagagatgtggaccttcggtgcgcct |
292 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| | ||| | ||||||||| | ||| ||||| ||||||||||| | ||||||| |
|
|
| T |
41313282 |
ttgggagttgaccc-ttttccgtatttgaaaatcagataataataatgacttacagttggaggctccgagatatgtggacctttgatgcgcct |
41313191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 292
Target Start/End: Original strand, 19216103 - 19216389
Alignment:
| Q |
5 |
ttttgttgccctataagggaggtgatattccgatcatttgtgtcgcatataggtcaa----tagggtgttgtgcatttgtcgagtccactggtgtttggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||| |||||||| ||||| | ||||||||||||||||||| || ||||| || |
|
|
| T |
19216103 |
ttttgttgccctataagggaggtgatatccggatcatttgtgtcgcatctaggtcaacctttagggcgctgtgcatttgtcgagtccattgttgttttgg |
19216202 |
T |
|
| Q |
101 |
gtgttgatattttatgtaccttatattaataaatatgctattttaatggtttaaaatacatgttaaatatctaat-tgtaacttgtatgtttgttgttgt |
199 |
Q |
| |
|
||| ||| ||||| ||||| ||||||||||| | | |||||| || || |||||||||||||||| ||| | |||||||||| ||||| |||| |
|
|
| T |
19216203 |
gtgatgacattttgtgtactttatattaatatttgtactatttgcatacctttaaatacatgttaaata---aatgtataacttgtatatttgt--ttgt |
19216297 |
T |
|
| Q |
200 |
ttgggagttgaccctttttccgtatttgaaaatcagatagttatatcaatttacagttgaaagcttcgagagatgtggaccttcggtgcgcct |
292 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| | ||| | ||||||||| | ||| ||||| ||||||||||| ||||||||| |
|
|
| T |
19216298 |
ttgggagttgaccc-ttttccgtatttgaaaatcagataatgataatgacttacagttggaggctccgagatatgtggacctttggtgcgcct |
19216389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 288
Target Start/End: Complemental strand, 58495 - 58211
Alignment:
| Q |
5 |
ttttgttgccctataagggaggtgatattccgatcatttgtgtcgcatataggtcaa---tagggtgttgtgcatttgtcgagtccactggtgtttgggg |
101 |
Q |
| |
|
||||||||||||| |||||||||||||| | |||||||||||||||||||| |||| || ||||| || ||||||||||||||| |||||| | ||| |
|
|
| T |
58495 |
ttttgttgccctacaagggaggtgatatccggatcatttgtgtcgcatatatgtcagctttaaggtgtcgttcatttgtcgagtccattggtgtcttggg |
58396 |
T |
|
| Q |
102 |
tgttgatattttatgtaccttatattaataaatatgctattttaatggtttaaaatacatgttaaatatctaattgtaacttgtatgtttgttgttgttt |
201 |
Q |
| |
|
| |||| ||||| |||| |||||||| || | | |||||||| || || |||| | |||||||||| | | |||||||||| ||||||||||||| |
|
|
| T |
58395 |
tcttgacattttgtgtagtttatattattatttgtactattttattgtcttgaaatgcgtgttaaatatatg--tataacttgtatatttgttgttgttt |
58298 |
T |
|
| Q |
202 |
gggagttgaccctttttccgtatttgaaaatcagatagttatatcaatttacagttgaaagcttcgagagatgtggaccttcggtgc |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||| | ||||||||| | |||| || |||||||||||| ||||| |
|
|
| T |
58297 |
gggagttgaccctttttccgtatttgaaaatcagataatgataatgacttacagttggaggcttagactgatgtggaccttgggtgc |
58211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 5 - 292
Target Start/End: Original strand, 2188457 - 2188742
Alignment:
| Q |
5 |
ttttgttgccctataagggaggtgatattccgatcatttgtgtcgcatataggtcaa----tagggtgttgtgcatttgtcgagtccactggtgtttggg |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||| || ||||| || |
|
|
| T |
2188457 |
ttttgttgccctataagg-aggtgatatccggatcatttgtgtcgcatataggttaacctttagggtgttgtgcatttgtcgagtccattgttgttttgg |
2188555 |
T |
|
| Q |
101 |
gtgttgatattttatgtaccttatattaataaatatgctattttaatggtttaaaatacatgttaaatatctaat-tgtaacttgtatgtttgttgttgt |
199 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||| | | |||||| ||| || |||||||||||||||| ||| | |||||||||| ||||| |||| |
|
|
| T |
2188556 |
gtgttgacattttgtgtactttatattaatatttgtactatttgcatgtctttaaatacatgttaaata---aatgtataacttgtatatttgt--ttgt |
2188650 |
T |
|
| Q |
200 |
ttgggagttgaccctttttccgtatttgaaaatcagatagttatatcaatttacagttgaaagcttcgagagatgtggaccttcggtgcgcct |
292 |
Q |
| |
|
||||||| | || | |||||||||||||||||||||||| | ||| | ||||||||| | ||| ||||| ||||||||||| | ||||||| |
|
|
| T |
2188651 |
ttgggagctaacac-ttttccgtatttgaaaatcagataatgataatgacttacagttggaggctccgagatatgtggacctttgatgcgcct |
2188742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 19632448 - 19632164
Alignment:
| Q |
5 |
ttttgttgccctataagggaggtgatattccgatcatttgtgtcgcatataggtcaa---tagggtgttgtgcatttgtcgagtccactggtgtttgggg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||| || ||||| || |||||||||||||||||||||| | ||| |
|
|
| T |
19632448 |
ttttgttgccctataagggaggtgatatccagatcatttgtgtcgcatataggtcaactttaaggtgtcgttcatttgtcgagtccactggtgtcttggg |
19632349 |
T |
|
| Q |
102 |
tgttgatattttatgtaccttatattaataaatatgctattttaatggtttaaaatacatgttaaatatctaattgtaacttgtatgtttgttgttgttt |
201 |
Q |
| |
|
| |||| | ||| |||| |||||||| || | | |||||| || || |||||| ||||||||| || | |||||||||| ||||| |||||| |
|
|
| T |
19632348 |
tcttgaca-tttgtgtagtttatattattatttgtactatttgcttgtcttgaaatacctgttaaata--tatgtataacttgtatatttgt--ttgttt |
19632254 |
T |
|
| Q |
202 |
gggagttgaccctttttccgtatttgaaaatcagatagttatatcaatttacagttgaaagcttcgagagatgtggaccttcggtgcgcct |
292 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| | ||| | ||||||||| | ||| ||||| ||||||||||| ||||||||| |
|
|
| T |
19632253 |
gggagttga-cctttttccgtatttgaaaatcagataatgataatgacttacagttggaggctccgagatatgtggacctttggtgcgcct |
19632164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 178 - 290
Target Start/End: Complemental strand, 1608189 - 1608077
Alignment:
| Q |
178 |
taacttgtatgtttgttgttgtttgggagttgaccctttttccgtatttgaaaatcagatagttatatcaatttacagttgaaagcttcgagagatgtgg |
277 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||||||| | |||| ||| ||||||| |
|
|
| T |
1608189 |
taacttgtatatttgttgttgtttgggagttgaccctttttccgtatttgaaaatcagataatgataatgacttacagttggaggcttagagtgatgtgg |
1608090 |
T |
|
| Q |
278 |
accttcggtgcgc |
290 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
1608089 |
accttgggtgcgc |
1608077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 20536969 - 20536690
Alignment:
| Q |
5 |
ttttgttgccctataagggaggtgatattccgatcatttgtgtcgcatataggtcaa---tagggtgttgtgcatttgtcgagtccactggtgtttgggg |
101 |
Q |
| |
|
|||||||||||| ||||||||||||||| | |||||||||||||||||||||||||| || ||||| | ||||||||||||||||| |||| | ||| |
|
|
| T |
20536969 |
ttttgttgccctttaagggaggtgatatccggatcatttgtgtcgcatataggtcaactttaaggtgtcgctcatttgtcgagtccactagtgtcttggg |
20536870 |
T |
|
| Q |
102 |
tgttgatattttatgtaccttatattaataaatatgctattttaatggtttaaaatacatgttaaatatctaattgtaacttgtatgtttgttgttgttt |
201 |
Q |
| |
|
| |||| |||| |||| |||||||| ||| | | |||||| || || |||||| ||| | | |||||||||| ||| |||||||| |
|
|
| T |
20536869 |
tcttgacgttttgtgtagtttatattattaattgtactatttgcttgactt--------tgttaattatatg--tataacttgtatatttattgttgtt- |
20536781 |
T |
|
| Q |
202 |
gggagttgaccctttttccgtatttgaaaatcagatagttatatcaatttacagttgaaagcttcgagagatgtggaccttcggtgcgcct |
292 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| | ||| | ||||||||| | |||| ||| |||||||||||| ||||||||| |
|
|
| T |
20536780 |
gggagttgaccttttttccgtatttgaaaatcagataatgataatgacttacagttggaggcttagagtgatgtggaccttgggtgcgcct |
20536690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 1608357 - 1608244
Alignment:
| Q |
5 |
ttttgttgccctat-aagggaggtgatattccgatcatttgtgtcgcatataggtcaa---tagggtgttgtgcatttgtcgagtccactggtgt-ttgg |
99 |
Q |
| |
|
|||||||||||| | |||||||||||||| | |||||||||||||||||||||||||| || ||||| || ||||||||||||||||| |||| |||| |
|
|
| T |
1608357 |
ttttgttgcccttttaagggaggtgatatccggatcatttgtgtcgcatataggtcaactttaaggtgtcgttcatttgtcgagtccactagtgtcttgg |
1608258 |
T |
|
| Q |
100 |
ggtgttgatatttt |
113 |
Q |
| |
|
||| |||| ||||| |
|
|
| T |
1608257 |
ggtcttgacatttt |
1608244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 451850 - 451563
Alignment:
| Q |
5 |
ttttgttgccctataagggaggtgatattccgatca-tttgtgtcgcatataggtcaa---tagggtgttgtgcatttgtcgagtccactggtgtttggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | |||||||||| ||||||||| || ||||| || |||||||||||||||||||||| | || |
|
|
| T |
451850 |
ttttgttgccctataagggaggtgatat-ccgattaatttgtgtcgcctataggtcagctttaaggtgtcgttcatttgtcgagtccactggtgtcttgg |
451752 |
T |
|
| Q |
101 |
gtgttgatattttatgtaccttatattaataaatatgctattttaatggtttaaaatacatgttaaatatctaattgtaacttgtatgtttgttgttgtt |
200 |
Q |
| |
|
|| |||| ||||| |||| |||||||| || | | |||||| || || |||||| |||||||||| | | |||||||||| |||||||||||| |
|
|
| T |
451751 |
gtcttgacattttgtgtagtttatattattat-tgtactatttgcttgtcttgaaatacctgttaaatatatg--tataacttgtatatttgttgttgtt |
451655 |
T |
|
| Q |
201 |
tgggagttgaccctttttccgtatttgaaaatcagatagttatatcaatttacagttgaaagcttcgagagatgtggaccttcggtgcgcct |
292 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| | ||| | ||||||||| | |||| ||| |||||||||||| ||| ||||| |
|
|
| T |
451654 |
tgggagttaaccctttttccgtatttgaaaatcagataatgataatgacttacagttggaggcttagagtgatgtggaccttgggtccgcct |
451563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 288
Target Start/End: Complemental strand, 7097418 - 7097134
Alignment:
| Q |
5 |
ttttgttgccctataagggaggtgatattccgatcatttgt-gtcgcatataggtcaat----agggtgttgtgcatttgtcgagtccactggtgtttgg |
99 |
Q |
| |
|
|||||||| ||| |||| |||||||||| | ||||||||| |||||||||||||| | ||||||||||||||||||||||||||| |||||| | |
|
|
| T |
7097418 |
ttttgttgtcctttaagagaggtgatatccggatcatttggagtcgcatataggtcggtctttagggtgttgtgcatttgtcgagtccacatgtgttttg |
7097319 |
T |
|
| Q |
100 |
ggtgttgatattttatgtaccttatattaataaatatgctattttaatggtttaaaatacatgttaaatatctaattgtaacttgtatgtttgttgttgt |
199 |
Q |
| |
|
|||||||| ||||| |||| |||||||||| | | | |||| || || |||| |||||| ||||| | | ||||||||||||||||||||| |
|
|
| T |
7097318 |
ggtgttgacattttgtgtag-ttatattaatttttgtacaatttgcttgtcttgaaattcatgtttaatatatg--tacaacttgtatgtttgttgttgt |
7097222 |
T |
|
| Q |
200 |
ttgggagttgaccctttttccgtatttgaaaatcagatagttatatcaatttacagttgaaagcttcgagagatgtggaccttcggtgc |
288 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| | ||| ||||||||||| | |||||||| ||||||||| || ||||| |
|
|
| T |
7097221 |
ttgggagttgaccc-ttttccgtatttgaaaatcagataatgataatgatttacagttggaggcttcgagtgatgtggactttaggtgc |
7097134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 179 - 292
Target Start/End: Complemental strand, 7093509 - 7093397
Alignment:
| Q |
179 |
aacttgtatgtttgttgttgtttgggagttgaccctttttccgtatttgaaaatcagatagttatatcaatttacagttgaaagcttcgagagatgtgga |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| ||||||||||| | |||||||| |||||||| |
|
|
| T |
7093509 |
aacttgtatgtttgttgttgtttgggagttgaccc-ttttccgtatttgaaaatcagataatgataatgatttacagttggaggcttcgagtgatgtgga |
7093411 |
T |
|
| Q |
279 |
ccttcggtgcgcct |
292 |
Q |
| |
|
| || ||||||||| |
|
|
| T |
7093410 |
ctttaggtgcgcct |
7093397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 292
Target Start/End: Original strand, 29823229 - 29823511
Alignment:
| Q |
5 |
ttttgttgccctataagggaggtgatattccgatcatttgtgtcgcatataggtcaa---tagggtgttgtgcatttgtcgagtccactggtgtttgggg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||| || ||||| || |||||||||||| ||||| ||| | ||| |
|
|
| T |
29823229 |
ttttgttgccctataagggaggtgatatccggatcatttgtgtcgcatataggtcaactttaaggtgtcgttcatttgtcgagttcactgatgtcttggg |
29823328 |
T |
|
| Q |
102 |
tgttgatattttatgtaccttatattaataaatatgctattttaatggtttaaaatacatgttaaatatctaattgtaacttgtatgtttgttgttgttt |
201 |
Q |
| |
|
| |||| | ||| |||| |||||||| || | | |||||| || || |||||| ||||||| || | ||||||||| ||||| |||||| |
|
|
| T |
29823329 |
tcttgaca-tttgtgtagtttatattattatttgtactatttgtttgtcttgaaatacccattaaata--tatgtataacttgta--tttgt--ttgttt |
29823421 |
T |
|
| Q |
202 |
gggagttgaccctttttccgtatttgaaaatcagatagttatatcaatttacagttgaaagcttcgagagatgtggaccttcggtgcgcct |
292 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| | ||| | ||||||||| | ||| ||||| ||||||||||| ||||||||| |
|
|
| T |
29823422 |
gggagttgaccc-ttttccgtatttgaaaatcagataatgataatgacttacagttggaggctccgagatatgtggacctttggtgcgcct |
29823511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 7093685 - 7093578
Alignment:
| Q |
5 |
ttttgttgccctataagggaggtgatattccgatcatttgt-gtcgcatataggtcaat----agggtgttgtgcatttgtcgagtccactggtgtttgg |
99 |
Q |
| |
|
|||||||| ||| |||| |||||||||| | ||||||||| |||||||||||||| | ||||||||||||||||||||||||||| |||||| |
|
|
| T |
7093685 |
ttttgttgtcctttaagagaggtgatatccggatcatttggagtcgcatataggtcggtctttagggtgttgtgcatttgtcgagtccacatgtgttttt |
7093586 |
T |
|
| Q |
100 |
ggtgttga |
107 |
Q |
| |
|
|||||||| |
|
|
| T |
7093585 |
ggtgttga |
7093578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 5 - 292
Target Start/End: Original strand, 16987 - 17275
Alignment:
| Q |
5 |
ttttgttgccctataagggaggtgatattccgatcatttgtgtcgcatataggtcaa---tagggtgttgtgcatttgtcgagtccactggtgtttgggg |
101 |
Q |
| |
|
|||||||| ||||||||||||| ||||| | ||||||||||||| |||||||||||| || ||||| || ||||||||||||||||| |||| | ||| |
|
|
| T |
16987 |
ttttgttgtcctataagggaggcgatatccggatcatttgtgtcacatataggtcaactttaaggtgtcgttcatttgtcgagtccactagtgtcttggg |
17086 |
T |
|
| Q |
102 |
tgttgatattttatgtaccttatattaataaatatgctattttaatggtttaaaatacatgttaaatatctaattgtaacttgtatgtttgttgttgttt |
201 |
Q |
| |
|
| |||| ||||| |||| |||||||| || | |||||| || || |||||| ||||||||| || | |||||||||| ||||||||||||| |
|
|
| T |
17087 |
tcttgacattttgtgtagtttatattattattcgtactatttgcttgtcttgaaatacctgttaaata--tatgtataacttgtatatttgttgttgttt |
17184 |
T |
|
| Q |
202 |
gggagttgaccctttttccgtatttgaaaatcagatagttatatcaatttacagttgaaagcttcgagagatgtggaccttcggtgcgcct |
292 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||| | ||| | ||||| ||| | |||| ||| |||||||||||| ||||||||| |
|
|
| T |
17185 |
gggagttgatcctttttccgtatttgaaaattagatgatgataatgacttacatttggaggcttagagtgatgtggaccttgggtgcgcct |
17275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 292
Target Start/End: Original strand, 8378139 - 8378427
Alignment:
| Q |
5 |
ttttgttgccctataagggaggtgatattccgatcatttgt-gtcgcatatag----gtcaatagggtgttgtgcatttgtcgagtccactggtgtttgg |
99 |
Q |
| |
|
|||||||| ||| ||||||||||||||| | ||||||||| ||||||||||| ||| |||||||||||||||||||||||||||| |||||| | |
|
|
| T |
8378139 |
ttttgttgtcctttaagggaggtgatatccggatcatttggagtcgcatatagttcggtctttagggtgttgtgcatttgtcgagtccacatgtgttttg |
8378238 |
T |
|
| Q |
100 |
ggtgttgatattttatgtaccttatattaataaatatgctattttaatggtttaaaatacatgttaaatatctaattgtaacttgtatgtttgttgttgt |
199 |
Q |
| |
|
|||||||| ||||| |||| |||||||||| | | | |||| || || |||| |||||| ||||| | | ||||||||||||||||||||| |
|
|
| T |
8378239 |
ggtgttgacattttgtgtag-ttatattaatttttgtacaatttgcttgtcttgaaattcatgttcaatatatg--tacaacttgtatgtttgttgttgt |
8378335 |
T |
|
| Q |
200 |
ttgggagttgaccctttttccgtatttgaaaatcagatagttatatcaatttacagttgaaagcttcgagagatgtggaccttcggtgcgcct |
292 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||| | ||| | ||||||||| | |||||||| ||||||||| || ||||||||| |
|
|
| T |
8378336 |
ctgggaattgaccc-ttttccgtatttgaaaatcagataatgataatgacttacagttggaggcttcgagtgatgtggactttaggtgcgcct |
8378427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2006 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold2006
Description:
Target: scaffold2006; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 1105 - 1048
Alignment:
| Q |
178 |
taacttgtatgtttgttgttgtttgggagttgaccctttttccgtatttgaaaatcagata |
238 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
1105 |
taacttgtatatttgtt--tgtttggtagttgaccctttt-ccgtatttgaaaatcagata |
1048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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