View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1170_low_37 (Length: 285)
Name: NF1170_low_37
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1170_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 284
Target Start/End: Original strand, 17477686 - 17477960
Alignment:
| Q |
10 |
gtaaaatctatgggaaagttgcagcttgcaacttacatagagcagctttgaatttcagttttaattttcattttcctcacatgaggtatggctgcaatat |
109 |
Q |
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| T |
17477686 |
gtaaaatctatgggaaagttgcagcttgcaactaacatagagcaactttgaatttcagttttaattttcattttcctcacatgaggtatggctgcaatat |
17477785 |
T |
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| Q |
110 |
gaagttttgaagcgaagcacgatattcgatcacacaggcttccataagaagataaatagccacgtacctcttcgactaactcggtccctttactatctaa |
209 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17477786 |
gaagttttgaagtgaagcatgatattcgatcacacaggcttccataagaagataaatagccacgtacctcttcgactaactcggtccctttactatctaa |
17477885 |
T |
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| Q |
210 |
ctgatccactttagctgttgcagattctttttctgaggtaattctactatttgcggcatccacctgtcgattata |
284 |
Q |
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| T |
17477886 |
ctgatccaatttagctgttgcagattctttttctgaggtaattctactatttgcggcatccacctgtcgattata |
17477960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 36888645 - 36888919
Alignment:
| Q |
10 |
gtaaaatctatgggaaagttgcagcttgcaacttacatagagcagctttgaatttcagttttaattttcattttcctcacatgaggtatggctgcaatat |
109 |
Q |
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| T |
36888645 |
gtaaaatctatgtgaaagttgcaacttgcaactgacatagagcaactttgaatctcagttctaatttccattttcctattat--ggtatggctgcaattt |
36888742 |
T |
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| Q |
110 |
gaagttttgaagcgaagcacg---------atattcgatcacacaggcttccataagaagataaatagccacgtacctcttcgactaactcggtcccttt |
200 |
Q |
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| T |
36888743 |
gaaattttgaagccaaatagggtcttagaatttttagaccacacatgcttccaaaataggataaatggccacatacctctttttctatctcttcgcattt |
36888842 |
T |
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| Q |
201 |
actatctaactgatccactttagctgttgcagattctttttctgaggtaattctactatttgcggcatccacctgtc |
277 |
Q |
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| T |
36888843 |
actatctaactgatccactttttttgttgcagattcttttgccaaggtaattctactatttaccgcatccacctgtc |
36888919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 36908924 - 36908847
Alignment:
| Q |
10 |
gtaaaatctatgggaaagttgcagcttgcaacttacatagagcagctttgaatttcagttttaattttcattttcctc |
87 |
Q |
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||||| |||||| |||||||||| ||||||||| |||||||||| |||||||||| |||| ||||||||||| |||| |
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| T |
36908924 |
gtaaagtctatgcgaaagttgcaacttgcaactgacatagagcaactttgaatttgagttacaattttcatttccctc |
36908847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 277
Target Start/End: Complemental strand, 36908539 - 36908409
Alignment:
| Q |
147 |
gcttccataagaagataaatagccacgtacctcttcgactaactcggtccctttactatctaactgatccactttagctgttgcagattctttttctgag |
246 |
Q |
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||||||| |||||||||||| || || |||| |||||| | |||| | | |||| | || | ||||||||||||| |||||||||||||||| ||||| |
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| T |
36908539 |
gcttccaaaagaagataaatggcaacataccacttcgaaaagctcgctgcatttaatttccatctgatccactttaagtgttgcagattcttttactgag |
36908440 |
T |
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| Q |
247 |
gtaattctactatttgcggcatccacctgtc |
277 |
Q |
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| T |
36908439 |
gtctctctactgtttatgacatccacctgtc |
36908409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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