View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1170_low_39 (Length: 280)
Name: NF1170_low_39
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1170_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 51490660 - 51490437
Alignment:
| Q |
29 |
accaagaattaaaaaatagtgtgagttatgaatgtgatactgtgtacaaatcaaacaagactatataaataaagataaggtgaaactgaagcttgatacc |
128 |
Q |
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| T |
51490660 |
accaaaaaataaaaaatagtgtgagttatgaatgtgatactatgtacaaatcaaacaagactatataaatagagataaggtgaaactgaagcttgatacc |
51490561 |
T |
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| Q |
129 |
agcatgaccttgtacgctaatccaatttttggtgcagcaaaagaagtggacttagtttcatgcttaccaatatcaatcatgatctcaaaatgacaactac |
228 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51490560 |
agcatgaacttgtacgctaatccaatttttggtgcagcaaaagaagtggacttagtttcatgcttcccaatatcaatcatgatctcaaaatgacaactac |
51490461 |
T |
|
| Q |
229 |
cttgagaaggtgaaggatcaatgt |
252 |
Q |
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|||||||||||||||||||||||| |
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| T |
51490460 |
cttgagaaggtgaaggatcaatgt |
51490437 |
T |
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