View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1170_low_45 (Length: 254)
Name: NF1170_low_45
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1170_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 42375993 - 42376203
Alignment:
| Q |
1 |
gacagttagttgagtttggtaacttaccatgtactttgccttcattttacttaatttcaattaagcacttatttaattaatcgggtttgttttttgaaca |
100 |
Q |
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| T |
42375993 |
gacagttagttgagtttggtaacttaccatgtactttgccttcattttacttaatttcaattaagcacttatttaattaatcgggtttgttttttgaaca |
42376092 |
T |
|
| Q |
101 |
tcagatttaagagtcacgtgtgacaatatgttatatgtgtgcacatattcatatttctcactta-tttttatcgtatatattgatgtctgaccttagttg |
199 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
42376093 |
tcagatttgagagtcacgtgtgacaatatgttatatgtgtgcacatattcatatttctcacttattttttatcgtatatattgatttctgaccttagttg |
42376192 |
T |
|
| Q |
200 |
atgttcccctt |
210 |
Q |
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||||||||||| |
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| T |
42376193 |
atgttcccctt |
42376203 |
T |
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