View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1170_low_5 (Length: 517)
Name: NF1170_low_5
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1170_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 29 - 504
Target Start/End: Original strand, 2342475 - 2342942
Alignment:
| Q |
29 |
agaatttgagctcttgtattcaaatcaagatgatagattaaaatattaatctaacaaagtaactttaacattttaacatttttcattnnnnnnnnnnnng |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| | |
|
|
| T |
2342475 |
agaatttgagctcttgtattcaaatcaagatgatagattaaaatattaatctaacaaactaactttaacatttt--------tcattaaaaacaaaaaag |
2342566 |
T |
|
| Q |
129 |
ttaatgatacattgaactttcaaaatatcaaatagatagaaacacaannnnnnnataaaagcacatttaaattagaaaagagagagtataaggtaactaa |
228 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2342567 |
ttaatgatacattgaactttgaaaatatcaaatagatagaaacacaatttttttataaaagcacatttaaattagaaaagagagagtataaggtaactaa |
2342666 |
T |
|
| Q |
229 |
tatttctttacctctccttgtagtttctgattatgaactttaagtgcatcattttcatccttgacagcttcaaatttcttcttgaggacttcatattcat |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2342667 |
tatttctttacctctccttgtagtttctgattatgaactttaagtgcatcattttcatccttgacagcttcaaatttcttcttgaggacttcatattcat |
2342766 |
T |
|
| Q |
329 |
tctcaagttgctttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgcaaccctaaagccttagcaagttgcacttttct |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2342767 |
tctcaagttgctttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgcaaccctaaagccttagcaagttgcacttttct |
2342866 |
T |
|
| Q |
429 |
ttctggatcaagcttgttcccaaattcaaagctcttctcaagggcctgcacttgatccaaattcagcctgatcttc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2342867 |
ttctggatcaagcttgttcccaaattcaaagctcttctcaagggcctgcacttgatccaaattcagtctgatcttc |
2342942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 298 - 470
Target Start/End: Original strand, 3353646 - 3353818
Alignment:
| Q |
298 |
tcaaatttcttcttgaggacttcatattcattctcaagttgctttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgca |
397 |
Q |
| |
|
||||||| ||||| || ||||||||||| |||||||||||||| ||||| || |||||||||||||| || ||||||||||| | ||||||||| || | |
|
|
| T |
3353646 |
tcaaattgtttcttaagaacttcatattctttctcaagttgcttagttttccaccttgctcttctattttggaaccatatagctacttgtctaggttgta |
3353745 |
T |
|
| Q |
398 |
accctaaagccttagcaagttgcacttttctttctggatcaagcttgttcccaaattcaaagctcttctcaag |
470 |
Q |
| |
|
|||| ||||| ||||| | ||||| ||| || || || ||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
3353746 |
accccaaagctttagccaattgcattttcctctcaggttcaagcttgtttccaatctcaaaactcttctcaag |
3353818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 340 - 398
Target Start/End: Original strand, 42087487 - 42087545
Alignment:
| Q |
340 |
tttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgcaa |
398 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42087487 |
tttgatttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaa |
42087545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 337 - 497
Target Start/End: Original strand, 17181898 - 17182058
Alignment:
| Q |
337 |
tgctttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgcaaccctaaagccttagcaagttgcacttttctttctggat |
436 |
Q |
| |
|
|||||||| || |||||||| |||||||| |||||||||||||||| ||||||||| ||||| | ||| | ||||| |||| ||| || || || | |
|
|
| T |
17181898 |
tgctttgtcttccatcttgcccttctattttgaaaccatatagcaacttgtctaggttgcaagttaagagctcttgcaagctgcattttcctctcaggct |
17181997 |
T |
|
| Q |
437 |
caagcttgttcccaaattcaaagctcttctcaagggcctgcacttgatccaaattcagcct |
497 |
Q |
| |
|
||||||| || |||| |||||| ||||||||||| | || |||||| |||| ||| ||||| |
|
|
| T |
17181998 |
caagcttattaccaagttcaaaactcttctcaagtgtcttcacttgttccatattaagcct |
17182058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 331 - 398
Target Start/End: Complemental strand, 9379127 - 9379060
Alignment:
| Q |
331 |
tcaagttgctttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgcaa |
398 |
Q |
| |
|
||||||||||||| ||| ||||| |||||| | || |||||||||||||||| |||||| |||||||| |
|
|
| T |
9379127 |
tcaagttgctttgatttccatctagctcttttgttttgaaaccatatagcaacttgtcttggctgcaa |
9379060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 487
Target Start/End: Original strand, 24692391 - 24692520
Alignment:
| Q |
358 |
cttctattctgaaaccatatagcaatttgtctaggctgcaaccctaaagccttagcaagttgcacttttctttctggatcaagcttgttcccaaattcaa |
457 |
Q |
| |
|
||||| || ||||||||||||||||||||||| |||||||| || | ||| | || || |||| ||| || || || ||||||||||| || || |||| |
|
|
| T |
24692391 |
cttctgttttgaaaccatatagcaatttgtcttggctgcaatccaagagctcttgctagctgcattttcctctcaggttcaagcttgtttcctaactcaa |
24692490 |
T |
|
| Q |
458 |
agctcttctcaagggcctgcacttgatcca |
487 |
Q |
| |
|
| ||||||||||| | || |||||| |||| |
|
|
| T |
24692491 |
aactcttctcaagtgtcttcacttgttcca |
24692520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University