View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1170_low_52 (Length: 228)
Name: NF1170_low_52
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1170_low_52 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold2006 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 92 - 228
Target Start/End: Original strand, 11991118 - 11991253
Alignment:
| Q |
92 |
tatacatttcttagtgaaaaagatgaataattannnnnnnncttataaataataggagaaactgaaaactcatagactccaaaatacacgaataaatagg |
191 |
Q |
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| T |
11991118 |
tatacatttcttagtgaaaaagatgaataattattttttt-cttataaataataggagaaactgaaaactcataggcttcaaaatacatgaataaacagg |
11991216 |
T |
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| Q |
192 |
tttctcttaaattttcaaaatagtaaattaaagttgt |
228 |
Q |
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| T |
11991217 |
tttctcttaaattttcaaaatagtaaatcagagttgt |
11991253 |
T |
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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 92 - 228
Target Start/End: Original strand, 14275302 - 14275438
Alignment:
| Q |
92 |
tatacatttcttagtgaaaaagatgaataattannnnnnnncttataaataataggagaaactgaaaactcatagactccaaaatacacgaataaatagg |
191 |
Q |
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| T |
14275302 |
tatatatttcttagtgaaaaagatgaatatttttttttcttcttataaataataggagaaactgaaaactcataggcttcaaaatacacgaataaacagg |
14275401 |
T |
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| Q |
192 |
tttctcttaaattttcaaaatagtaaattaaagttgt |
228 |
Q |
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| T |
14275402 |
tttctcttaaattttcaaaatagtaaatcagagttgt |
14275438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 14275135 - 14275222
Alignment:
| Q |
5 |
cacaaagttccagaagcacattccatatccaaatatgttattgtggaatattatggtgtctacattacatttgatcacaccagctgat |
92 |
Q |
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| T |
14275135 |
cacagagttccagaagcacattccatatcctaatgtgttattgtggaatattatggtgtctacattacatttgatcacaccagctgat |
14275222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 37803007 - 37803083
Alignment:
| Q |
151 |
aactgaaaactcatagactccaaaatacacgaataaataggtttctcttaaattttcaaaatagtaaattaaagttgt |
228 |
Q |
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| T |
37803007 |
aactgaaaactcattgacttcaaaaaatt-gaataaataagtttctcttgaattttcagaatagtaaattagagttgt |
37803083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 51140526 - 51140576
Alignment:
| Q |
40 |
tgttattgtggaatattatggtgtctacattacatttgatcacaccagctg |
90 |
Q |
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| T |
51140526 |
tgttgttgtggaatattgcagcgtctacattacatttgatcacaccagctg |
51140576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2006 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold2006
Description:
Target: scaffold2006; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 810 - 886
Alignment:
| Q |
151 |
aactgaaaactcatagactccaaaatacacgaataaataggtttctcttaaattttcaaaatagtaaattaaagttgt |
228 |
Q |
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| T |
810 |
aactgaaaactcattgacttcaaaa-aattgaataaataagtttctcttgaattttcagaatagtaaataagagttgt |
886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 19216572 - 19216496
Alignment:
| Q |
151 |
aactgaaaactcatagactccaaaatacacgaataaataggtttctcttaaattttcaaaatagtaaattaaagttgt |
228 |
Q |
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| T |
19216572 |
aactgaaaactcattgacttcaaaa-aattgaataaataagtttctcttgaattttcagaatagtaaatcagagttgt |
19216496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 48185741 - 48185785
Alignment:
| Q |
182 |
aataaataggtttctcttaaattttcaaaatagtaaattaaagtt |
226 |
Q |
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| T |
48185741 |
aataaataaatttctcttaaattttcaaaacagtaaattagagtt |
48185785 |
T |
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