View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1170_low_59 (Length: 202)

Name: NF1170_low_59
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1170_low_59
NF1170_low_59
[»] chr4 (2 HSPs)
chr4 (130-193)||(17477897-17477960)
chr4 (25-73)||(17478435-17478479)
[»] chr8 (1 HSPs)
chr8 (100-189)||(36888867-36888958)


Alignment Details
Target: chr4 (Bit Score: 64; Significance: 3e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 17477960 - 17477897
Alignment:
Q  130 tataatcgacaggtggatgccgcaaatagtagaattacctcagaaaaagaatctgcaacagcta 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17477960 tataatcgacaggtggatgccgcaaatagtagaattacctcagaaaaagaatctgcaacagcta 17477897  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 17478479 - 17478435
Alignment:
Q  25 tgtcaaagcacaacaaacaagtgcaggcaggctatgcaagaacaggtat 73  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||    
T  17478479 tgtcaaagcacaacaaacaagtgc----aggctatgcaagaacaggtat 17478435  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 189
Target Start/End: Complemental strand, 36888958 - 36888867
Alignment:
Q  100 tttgatgagagaataaattgttatttagtgtata--atcgacaggtggatgccgcaaatagtagaattacctcagaaaaagaatctgcaaca 189  Q
    |||||||| |||||||||||||||||  ||| ||  || ||||||||||||| | |||||||||||||||||  | ||||||||||||||||    
T  36888958 tttgatgaaagaataaattgttattttttgtttacaattgacaggtggatgcggtaaatagtagaattaccttggcaaaagaatctgcaaca 36888867  T

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