View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1170_low_6 (Length: 513)
Name: NF1170_low_6
Description: NF1170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1170_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 8 - 412
Target Start/End: Original strand, 30308940 - 30309354
Alignment:
| Q |
8 |
cgaataatataccctttagttgttctcttaactcgaaaacttgtatttatctacaatgcaaaacaacacataaacagcctgattttcaattctaactagg |
107 |
Q |
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| T |
30308940 |
cgaacaatataccctttagttgttctctcaactcgaaaacttgtatttatctacaatgcaaaacaacacataaacaacctgattttcaattctaactagg |
30309039 |
T |
|
| Q |
108 |
aatcattcttattataagcatacaataaggtagaatttaggcttaagcttaacatactctaacattggattcggcttttgaataccgccccaatacaaaa |
207 |
Q |
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| T |
30309040 |
aatcattcttattataagcatacaataaggtagaatttaggcttaagcttaacatactctaacattggattcggcttttgaataccgccccaatacaaaa |
30309139 |
T |
|
| Q |
208 |
taatgaaaattgaaatcatatcttatgcctatttcttacatataaacaacc-nnnnnnntatcatgattg---------catactaaattgcgtcaaggg |
297 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||| |||| |
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| T |
30309140 |
taatgaaaattgaaatcatatcttatgcatatttcttacatataaacaaccaaaaaaaatatcatgattgcattaagttcatactaaattgcgtcgaggg |
30309239 |
T |
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| Q |
298 |
aaatggaaggtgttgttcaggtaatgtgacgaggaggaaattgacctttcttgagaaaagatagagagtattcagcagcatcaattaagtcagcaatgtt |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30309240 |
aaatggaaggtgttgttcaggtaatgtgacgaggaggaaattgacctttcttgagaaaagaaagagagtattcagcagcatcaattaagtcagcaatgtt |
30309339 |
T |
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| Q |
398 |
atgcaaagacctttc |
412 |
Q |
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| T |
30309340 |
atgcaaagacctttc |
30309354 |
T |
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