View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11710_high_1 (Length: 428)
Name: NF11710_high_1
Description: NF11710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11710_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 17 - 412
Target Start/End: Complemental strand, 44561262 - 44560867
Alignment:
| Q |
17 |
atcaaatgacaatacttgtttcttgtttggactcaaattacaaaacttcaatgaatacttgtgaattcttactaccctgaagttatgattcttatggagt |
116 |
Q |
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| T |
44561262 |
atcaaatgacaatacttgtttcttgtttggactcaaattacaaaacttcaatgaatacttgtgaattcttactaccctgaagttatgattcttatggagt |
44561163 |
T |
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| Q |
117 |
tgcgtacccatcctctaaagattaaaagatctattacgatgttggattttgatggttttgttatttccgagaatacagattactctggtgggattatgat |
216 |
Q |
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| T |
44561162 |
tgcgtacccatcctctaaagattaaaagatctattacgatgttggattttgatggttttgttatttccgagaatacagattactctggtgggattatgat |
44561063 |
T |
|
| Q |
217 |
agcgtggaagcagggggtttggataattcttgctttataaaagattttctgtagtttttcatggaagacgagttttgtttcttacggcaatttatggtag |
316 |
Q |
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| T |
44561062 |
agcgtggaagcagggggtttggataattcttgctttatagaagattttccgtagtttttcatggaagacgagttttgtttcttacggcaatttatggtag |
44560963 |
T |
|
| Q |
317 |
tccagtggaggggagacctcagaaacattgttggaagtatgcaagaccagtggatgcttgttggcgatttcaatgttgtctcaagatgagaagaaa |
412 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44560962 |
tccagtggaggggggacctcagaaacattgttggaagtatgcaagaccagtggatgcttgttggcgatttcaatgttgtctcaagatgagaagaaa |
44560867 |
T |
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