View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11710_low_3 (Length: 402)
Name: NF11710_low_3
Description: NF11710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11710_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 331
Target Start/End: Original strand, 9389143 - 9389470
Alignment:
| Q |
7 |
cagtatgcattgaatttcttttctcactattaaaattcaaccccatgacatgtacttggtgatgatagccaagagaggtcggttagtaaacgggtgcatt |
106 |
Q |
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| T |
9389143 |
cagtatgcattgaatttcttttctcactattaaaatccaaccccatgacatgtacttggtgatgatagccaggagaggtcggttagtaaacgggtgcatt |
9389242 |
T |
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| Q |
107 |
tatatgaatctcnnnnnnnnnnnnn---ttaaagagagactcttactaattttagtaaaataccatatctcttctcttgttttagtaaaatccactattc |
203 |
Q |
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| T |
9389243 |
tatatgaatctcaaaacaaaacaaaaaattaaagagagactcttactaattttagtaaaataccatatctcttctcttgttttagtaaaatccactattt |
9389342 |
T |
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| Q |
204 |
acactaatttggtgtttaattttaatcaaaaatgaaatacatatgactatatattaagtagaaatcttcatcagcttattagatggtaagaacagtacat |
303 |
Q |
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| T |
9389343 |
tcactaatttggtgtttaattttaatcaaatatgaaatacatatgactatatattaaatagaagtcttcgtcagtttaatagttgatagggacagtacat |
9389442 |
T |
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| Q |
304 |
aatatatgtagatttcggatttcaaatt |
331 |
Q |
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| T |
9389443 |
aatatatgcaggattcggatttcaaatt |
9389470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 394
Target Start/End: Original strand, 9389519 - 9389564
Alignment:
| Q |
349 |
caatagaagatatccttcatactaggggtgaacctccattctaatt |
394 |
Q |
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| T |
9389519 |
caatagaagatatccttcataataggggtgaacctccattctaatt |
9389564 |
T |
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