View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11710_low_4 (Length: 397)

Name: NF11710_low_4
Description: NF11710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11710_low_4
NF11710_low_4
[»] chr1 (21 HSPs)
chr1 (105-392)||(39256187-39256479)
chr1 (103-392)||(24910603-24910897)
chr1 (103-392)||(33910326-33910620)
chr1 (125-392)||(33474680-33474952)
chr1 (103-392)||(16529041-16529335)
chr1 (125-392)||(32954318-32954585)
chr1 (110-392)||(51251987-51252264)
chr1 (103-392)||(1160583-1160861)
chr1 (191-382)||(44918790-44918981)
chr1 (103-392)||(45692035-45692324)
chr1 (115-303)||(11899367-11899560)
chr1 (238-382)||(29389281-29389425)
chr1 (156-261)||(6722430-6722529)
chr1 (103-208)||(29707696-29707801)
chr1 (148-208)||(5154997-5155057)
chr1 (148-208)||(8211639-8211699)
chr1 (125-208)||(20494094-20494182)
chr1 (149-203)||(27507074-27507128)
chr1 (345-382)||(11899264-11899301)
chr1 (125-177)||(29390133-29390190)
chr1 (155-203)||(44056200-44056248)
[»] chr6 (11 HSPs)
chr6 (103-392)||(13801532-13801821)
chr6 (103-392)||(35039488-35039782)
chr6 (121-380)||(33550574-33550838)
chr6 (104-392)||(25137383-25137675)
chr6 (151-392)||(15859967-15860207)
chr6 (125-381)||(10591099-10591349)
chr6 (103-380)||(10390590-10390858)
chr6 (154-236)||(10493997-10494079)
chr6 (103-208)||(12270905-12271015)
chr6 (148-208)||(5866682-5866742)
chr6 (314-353)||(10494223-10494262)
[»] chr5 (34 HSPs)
chr5 (104-392)||(36103162-36103455)
chr5 (103-381)||(2226433-2226716)
chr5 (103-392)||(12680625-12680919)
chr5 (115-382)||(30265360-30265626)
chr5 (103-378)||(12165493-12165773)
chr5 (105-392)||(9161221-9161511)
chr5 (128-392)||(332856-333127)
chr5 (103-392)||(32520775-32521064)
chr5 (103-392)||(38433924-38434218)
chr5 (212-378)||(35893238-35893405)
chr5 (115-392)||(23780972-23781225)
chr5 (115-392)||(23867925-23868178)
chr5 (115-381)||(10174322-10174575)
chr5 (103-382)||(36176670-36176934)
chr5 (103-275)||(36176439-36176616)
chr5 (200-382)||(42544902-42545086)
chr5 (186-392)||(17084513-17084719)
chr5 (268-392)||(38334684-38334808)
chr5 (245-381)||(9988586-9988722)
chr5 (103-190)||(42545822-42545914)
chr5 (103-208)||(666882-666992)
chr5 (115-208)||(11917804-11917902)
chr5 (103-208)||(15068825-15068935)
chr5 (103-208)||(27885697-27885807)
chr5 (148-208)||(701566-701626)
chr5 (148-208)||(8409335-8409395)
chr5 (103-208)||(38334365-38334475)
chr5 (148-208)||(30002347-30002407)
chr5 (103-210)||(35893442-35893547)
chr5 (345-392)||(35893200-35893247)
chr5 (115-189)||(35359464-35359538)
chr5 (181-239)||(9988538-9988593)
chr5 (149-203)||(691172-691226)
chr5 (149-203)||(23623469-23623523)
[»] chr2 (18 HSPs)
chr2 (148-388)||(25297856-25298096)
chr2 (103-392)||(11376125-11376414)
chr2 (103-392)||(44979325-44979619)
chr2 (125-392)||(44035548-44035820)
chr2 (148-392)||(17916458-17916704)
chr2 (103-392)||(19936675-19936964)
chr2 (104-392)||(34910547-34910841)
chr2 (148-316)||(18360115-18360283)
chr2 (268-392)||(20420438-20420562)
chr2 (312-392)||(18357509-18357589)
chr2 (103-208)||(9811739-9811849)
chr2 (148-209)||(42785130-42785191)
chr2 (103-208)||(20420777-20420887)
chr2 (103-195)||(16579002-16579099)
chr2 (148-208)||(36412961-36413021)
chr2 (149-203)||(44085956-44086010)
chr2 (175-203)||(12884840-12884868)
chr2 (151-199)||(41166625-41166673)
[»] chr3 (22 HSPs)
chr3 (104-382)||(6003944-6004227)
chr3 (103-392)||(21586402-21586690)
chr3 (190-392)||(50562223-50562425)
chr3 (103-382)||(35531712-35531991)
chr3 (120-392)||(43030666-43030923)
chr3 (125-380)||(32880547-32880812)
chr3 (180-392)||(33002756-33002968)
chr3 (191-382)||(39098187-39098378)
chr3 (250-392)||(27641870-27642012)
chr3 (103-243)||(48032691-48032836)
chr3 (103-208)||(10369610-10369720)
chr3 (103-194)||(27641772-27641868)
chr3 (148-208)||(34794923-34794983)
chr3 (103-208)||(33361312-33361422)
chr3 (103-208)||(35401784-35401894)
chr3 (103-208)||(51149282-51149392)
chr3 (151-203)||(38651604-38651656)
chr3 (103-208)||(4669207-4669317)
chr3 (149-203)||(42362781-42362835)
chr3 (149-203)||(50578559-50578613)
chr3 (149-203)||(51660563-51660617)
chr3 (125-173)||(39098381-39098429)
[»] scaffold0059 (2 HSPs)
scaffold0059 (115-392)||(69097-69379)
scaffold0059 (115-306)||(77203-77399)
[»] chr8 (16 HSPs)
chr8 (103-392)||(36827342-36827636)
chr8 (115-392)||(30392319-30392600)
chr8 (121-392)||(10661387-10661662)
chr8 (103-380)||(14549478-14549756)
chr8 (120-392)||(18169598-18169870)
chr8 (120-392)||(18633164-18633436)
chr8 (115-379)||(33068844-33069108)
chr8 (103-381)||(3682169-3682446)
chr8 (103-381)||(36909898-36910165)
chr8 (110-289)||(6200493-6200677)
chr8 (105-246)||(44673109-44673255)
chr8 (103-199)||(3006187-3006283)
chr8 (103-194)||(5802506-5802602)
chr8 (329-392)||(44673010-44673073)
chr8 (149-203)||(9012396-9012450)
chr8 (186-218)||(42496533-42496565)
[»] chr7 (34 HSPs)
chr7 (103-392)||(22366689-22366973)
chr7 (103-382)||(43429417-43429701)
chr7 (103-392)||(13852547-13852839)
chr7 (115-392)||(24360857-24361137)
chr7 (115-377)||(31876208-31876470)
chr7 (186-381)||(32823846-32824041)
chr7 (103-341)||(42910231-42910469)
chr7 (103-380)||(36921106-36921385)
chr7 (186-378)||(10069816-10070008)
chr7 (103-392)||(47903473-47903752)
chr7 (175-381)||(48675362-48675568)
chr7 (115-303)||(27054290-27054483)
chr7 (107-294)||(18672774-18672966)
chr7 (115-381)||(31982233-31982480)
chr7 (103-311)||(5932944-5933151)
chr7 (297-392)||(36508929-36509024)
chr7 (316-392)||(18672962-18673038)
chr7 (103-208)||(3211756-3211866)
chr7 (103-208)||(47070027-47070137)
chr7 (148-208)||(10672178-10672238)
chr7 (148-208)||(47204121-47204181)
chr7 (191-253)||(36509024-36509086)
chr7 (115-154)||(1335882-1335921)
chr7 (149-203)||(524430-524484)
chr7 (149-203)||(40849325-40849379)
chr7 (327-392)||(5932883-5932948)
chr7 (104-208)||(12117959-12118068)
chr7 (345-382)||(27054549-27054586)
chr7 (103-194)||(8768280-8768376)
chr7 (103-189)||(11205992-11206083)
chr7 (149-203)||(29628680-29628734)
chr7 (149-203)||(30079153-30079207)
chr7 (103-159)||(36509109-36509165)
chr7 (151-199)||(37376235-37376283)
[»] chr4 (27 HSPs)
chr4 (125-392)||(40806397-40806661)
chr4 (103-382)||(40899634-40899918)
chr4 (115-392)||(30193542-30193824)
chr4 (156-392)||(23937130-23937366)
chr4 (121-392)||(32136931-32137207)
chr4 (121-392)||(6333555-6333836)
chr4 (103-380)||(48996330-48996612)
chr4 (187-392)||(10218922-10219127)
chr4 (186-392)||(8176240-8176446)
chr4 (148-392)||(52344947-52345190)
chr4 (186-392)||(31301638-31301845)
chr4 (157-392)||(43630790-43631007)
chr4 (268-358)||(29639728-29639818)
chr4 (103-224)||(26477743-26477869)
chr4 (186-257)||(52345225-52345296)
chr4 (115-210)||(5261417-5261517)
chr4 (103-208)||(29639994-29640104)
chr4 (103-208)||(50570572-50570682)
chr4 (148-208)||(42558082-42558142)
chr4 (103-208)||(36078683-36078793)
chr4 (148-208)||(29643371-29643431)
chr4 (149-203)||(5121948-5122002)
chr4 (149-203)||(45983798-45983852)
chr4 (149-203)||(48338805-48338859)
chr4 (149-202)||(27743802-27743855)
chr4 (103-174)||(10219130-10219206)
chr4 (180-208)||(51395253-51395281)
[»] scaffold0013 (2 HSPs)
scaffold0013 (110-392)||(106273-106561)
scaffold0013 (181-392)||(128880-129092)
[»] scaffold0029 (2 HSPs)
scaffold0029 (103-392)||(40124-40418)
scaffold0029 (103-353)||(47320-47575)
[»] scaffold0308 (1 HSPs)
scaffold0308 (148-208)||(5517-5577)
[»] scaffold0204 (1 HSPs)
scaffold0204 (149-203)||(26327-26381)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 105 - 392
Target Start/End: Original strand, 39256187 - 39256479
Alignment:
Q  105 acttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaacc 199  Q
    |||| |||| ||||||||  ||||||||||||||| ||| |||||||||||||     |||||||||||||||| |||| ||||||||||||||||||||    
T  39256187 acttggttcggatgaatttggatgacttttgcactgaactgcgcggtttggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 39256286  T
Q  200 gcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggtt 299  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39256287 gcaagaataatgaatattacttaaacatgtactagccaaattacatagctcacgaataatctttttcgattcgatttttccattgttgcaccatcaggtt 39256386  T
Q  300 cgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| |||| ||||    
T  39256387 cgattctaattcctttccatctctttcaattcatttccaatgatgaatttgtttcctttatttcccaataatttgtttcatgcttatgtttct 39256479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 103 - 392
Target Start/End: Original strand, 24910603 - 24910897
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||||||| ||||||||||||| | ||||| || ||| ||||     || ||||||||||||| |||| ||||||||||||||||||    
T  24910603 gcacttggttcggatgaattcggatgacttttgcattgaaccgtgcagttcggttcagtttgtggtttgcatctcagcaaccgaaccaaaccaaaccaaa 24910702  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  24910703 ccggaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctctttcgattcgatttttcaattgttgcaccatcagg 24910802  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  24910803 ttcgattctaatttctttccatctctctcaattcatttcgagtgatgaatttgtttcctttacttcccaataatttgtttcatgcttatgtttct 24910897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 103 - 392
Target Start/End: Original strand, 33910326 - 33910620
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtt-----tggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||||||  ||||||||||||||| ||||||||||||     |||||||||||||||||||||  ||   |||||||||||||||||    
T  33910326 gcacttggttcggatgaatttggatgacttttgcactgaaccgcgcggttcggtttggtttgcggtttgcatctcagtaatcaaaccaaaccaaaccaaa 33910425  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||| ||| ||||||||||||||| |||||||||||||||    
T  33910426 ccgcaagaataatgaatattacttaaatatgtactagcccaattacataacttaagaataatctcttttgattcgatttttccaatgttgcaccatcagg 33910525  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  33910526 ttcgattctaattcttttccatctctttcaattcatttcaagtgatgaatttgtttcctttacttcccaataatttgtttcatgcttatgtttct 33910620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 125 - 392
Target Start/End: Complemental strand, 33474952 - 33474680
Alignment:
Q  125 gatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaatattac 219  Q
    ||||||||||||||| |||||||||||| ||||     || | ||||||||||| |||| ||||||||||||||||||| |||||||||| |||||||||    
T  33474952 gatgacttttgcactgaaccgcgcggttcggttcggtttgtgatttgcatctcatcaaccgaaccaaaccaaaccaaactgcaagaataacgaatattac 33474853  T
Q  220 ttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctttccat 319  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||| |||| ||||||| |||||||||  |||||||||||||||||||||||||||||    
T  33474852 ttaaatatgtactagcccaattacatagctcaagaataatctcttttgatttgattttttcattgttgcgtcatcaggttcgattctaattcctttccat 33474753  T
Q  320 ctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||    
T  33474752 ctctttcaattcatttccagtgatgaatttgtttcctttacatcccaataatttgtttcatgcttatgtttct 33474680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 103 - 392
Target Start/End: Original strand, 16529041 - 16529335
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggttt-----gcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| ||||  |||||||| |||| |||||||||| ||| |||| ||| |||||     ||||||||||||||| ||||  |||||||||||||||||    
T  16529041 gcacttggttcgtatgaattcggatggcttttgcactgaacagcgcagttcggtttagtatgcggtttgcatctcagcaaccaaaccaaaccaaaccaaa 16529140  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||||| |||| ||||||||||||||||||    
T  16529141 ccgcaagaatagtgaatattacttaaacatgtaatagcccaattacatagcccaagaataatctcttttgattcgaatttttcattgttgcaccatcagg 16529240  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| ||||| ||||||||||||||||| |||| ||||    
T  16529241 ttcgattctaattcctttccatctctttcaattcatttccagggatcaatttgtttccttttcttccaaataatttgtttcatgcttatgtttct 16529335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 125 - 392
Target Start/End: Complemental strand, 32954585 - 32954318
Alignment:
Q  125 gatgacttttgcactaaaccgcgcggttt-----ggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaatattac 219  Q
    |||||||||||||||||||||| |||||      |||| ||||||||||||||| |||| |||||||||||||||| |     |||||||||||||||||    
T  32954585 gatgacttttgcactaaaccgcacggttccgttcggttcgcggtttgcatctcagcaaccgaaccaaaccaaaccata-----agaataatgaatattac 32954491  T
Q  220 ttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctttccat 319  Q
    |||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||     
T  32954490 ttaaacatgtacaagcccaattacatagctcaagaataatttctttcgattcgatttttccattgttgcaccatcaggttcaattctaattactttccaa 32954391  T
Q  320 ctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    |||||||||||||||| |||||||||||||||||| ||||||||  ||||||||||||||||| |||| ||||    
T  32954390 ctctttcaattcattttcagtgatgaatttgtttcctttacttcataataatttgtttcatgcttatgtttct 32954318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 110 - 392
Target Start/End: Original strand, 51251987 - 51252264
Alignment:
Q  110 gttcagatgaattcagatgacttttgcactaaaccgcgc-----ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaag 204  Q
    |||| ||||||||| ||||||||||||| | ||||||||     ||||||||||||||||||||||||| ||||          |||||||| |||||||    
T  51251987 gttcggatgaattcggatgacttttgcaatgaaccgcgcagttcggtttggtttgcggtttgcatctcagcaac----------caaaccaacccgcaag 51252076  T
Q  205 aataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgatt 304  Q
    |||||||||||||||||||||||||||||||| |||||||||||  || |||||||| ||| |||||||||||||||||||||||||||||  |||||||    
T  51252077 aataatgaatattacttaaacatgtactagcctaattacatagccaaataataatctcttttgattcgatttttccattgttgcaccatcaaattcgatt 51252176  T
Q  305 ctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||| ||||    
T  51252177 ctaattcctttccatctctttcaattcatttccagttataaatttgtttcattttcttcccaataatttgtttcatgcttatgtttct 51252264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 103 - 392
Target Start/End: Original strand, 1160583 - 1160861
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||||||||||||||||||||||||||||| |||||| || || ||||     ||||||| |||||||| |||| ||||||||||||||||||    
T  1160583 gcacttggttcagatgaattcagatgacttttgcactgaaccgcacgattcggttcgatttgcggtt-gcatctcagcaaccgaaccaaaccaaaccaaa 1160681  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    ||||||||||||||||||               |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  1160682 ccgcaagaataatgaata---------------ctagccaaattacatagctcaagaataatctttttcgattcaatttttccattgttgcaacatcagg 1160766  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| |||| ||||    
T  1160767 tacgattctaattcctttccatctctttcaattcatttccagtgatgattttgtttcctttatttcccaataatttgtttcatgcttatgtttct 1160861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 191 - 382
Target Start/End: Complemental strand, 44918981 - 44918790
Alignment:
Q  191 aaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcac 290  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||| |    
T  44918981 aaccagaccgcaagaataatgaatattacttaaacatgtactagtccaattacatagctcaagaataatcttttttgatttgatttttccattgttgctc 44918882  T
Q  291 catcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgc 382  Q
    ||||| ||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  44918881 catcaagttcgattctaattcttttccatctctttcgattcatttccagtgattaatttgtttcctttacttcccaataatttgtttcatgc 44918790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 103 - 392
Target Start/End: Complemental strand, 45692324 - 45692035
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgc-----gcggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||||||  ||||||||||||||| ||||||      ||||| |||||||||||||||||||| |     |||| ||||||| ||||    
T  45692324 gcacttggttcggatgaatttggatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagc-----aaccgaaccaaaacaaa 45692230  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||| ||| ||||| |||||| |||||||||||||| |||    
T  45692229 ccgcaagaataataaatattacttaaatatgtactagtccaattacataactcaagaataatctcttttgattcaattttttcattgttgcaccattagg 45692130  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||| | || ||||||||| ||||||||| ||||||| |||| ||||    
T  45692129 ttcgattctaattcctttccatctctttcaattcatttacagagatgaatttatatcctttacttcctaataatttgcttcatgcttatgtttct 45692035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 115 - 303
Target Start/End: Complemental strand, 11899560 - 11899367
Alignment:
Q  115 gatgaattcagatgacttttgcactaaaccgcgcggtttggtttg-----cggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataa 209  Q
    |||||||||||||||||||||||||||| |   | ||||||||||     |||||||||||||| |||| ||| ||||||||||||||||||||||||||    
T  11899560 gatgaattcagatgacttttgcactaaaacatacagtttggtttgatttgcggtttgcatctcagcaaccgaatcaaaccaaaccaaaccgcaagaataa 11899461  T
Q  210 tgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgat 303  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||    
T  11899460 tgaatattacttaaatatgtactagctcaattacatagctcaagaataatcttttttgatttgatttttccattgttgcaccatcatgttcgat 11899367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 238 - 382
Target Start/End: Complemental strand, 29389425 - 29389281
Alignment:
Q  238 aattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctttccatctctttcaattcatttcc 337  Q
    ||||||| | |||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  29389425 aattacacaactcaagaataatctcttttaattcgatttttccattgttgcaccatcaggttcgattctaattcctctccatctctttcaactcatttcc 29389326  T
Q  338 agtgatgaatttgtttcatttacttcccaataatttgtttcatgc 382  Q
    || |||||| ||||||| |||||||||||||||||||||||||||    
T  29389325 agggatgaacttgtttcttttacttcccaataatttgtttcatgc 29389281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 156 - 261
Target Start/End: Original strand, 6722430 - 6722529
Alignment:
Q  156 tttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaa 255  Q
    |||||||||||||||||| |||| |||||||||||||||     |||||| ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  6722430 tttgcggtttgcatctcagcaaccgaaccaaaccaaacc-----gcaaga-taatgaatattacttaaacatgtactgacccaattacatagctcaagaa 6722523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 29707696 - 29707801
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgca 202  Q
    |||||| |||| ||||| ||| ||||||||||  ||| |||||| ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  29707696 gcacttggttcggatgagttcggatgacttttagactgaaccgcacggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgca 29707795  T
Q  203 agaata 208  Q
    | ||||    
T  29707796 aaaata 29707801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 5154997 - 5155057
Alignment:
Q  148 cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaata 208  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  5154997 cggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 5155057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 8211699 - 8211639
Alignment:
Q  148 cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaata 208  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  8211699 cggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 8211639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 20494182 - 20494094
Alignment:
Q  125 gatgacttttgcactaaaccgcgcggtttgg-----tttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaata 208  Q
    ||||||||||  ||| |||||||||||| ||     ||||| |||||||||||| |||| |||||||||||||||||||||||| ||||    
T  20494182 gatgacttttagactgaaccgcgcggttcggttcgatttgctgtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 20494094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 27507074 - 27507128
Alignment:
Q  149 ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaa 203  Q
    |||| ||||||||||||  || | | |||||||||||||||||||||||||||||    
T  27507074 ggttcggtttgcggttttgattttaccaactgaaccaaaccaaaccaaaccgcaa 27507128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 382
Target Start/End: Complemental strand, 11899301 - 11899264
Alignment:
Q  345 aatttgtttcatttacttcccaataatttgtttcatgc 382  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  11899301 aatttgtttcctttactttccaataatttgtttcatgc 11899264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 29390190 - 29390133
Alignment:
Q  125 gatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaa 177  Q
    ||||||||||||||| |||||||||||| ||||     ||||||||||||||||||||    
T  29390190 gatgacttttgcactgaaccgcgcggttcggttcggtttgcggtttgcatctcaacaa 29390133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 44056248 - 44056200
Alignment:
Q  155 gtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaa 203  Q
    ||||||||||| ||| | | |||||||||||||||||||||||| ||||    
T  44056248 gtttgcggttttcattttaccaactgaaccaaaccaaaccaaactgcaa 44056200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 103 - 392
Target Start/End: Original strand, 13801532 - 13801821
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgca 202  Q
    |||||| |||| ||||||||| ||||||||||| | | ||||||  |||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13801532 gcacttggttcggatgaattcggatgacttttgtattgaaccgcatggttcggtttgcggtttgcatctcatcaactgaaccaaaccaaaccaaaccgca 13801631  T
Q  203 agaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcga 302  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  13801632 agaataatgaatattacttaaatatgtactagcccaattacatagctcaagaataatctcttttgattcaatttttccattgttgcaccatcaggttcga 13801731  T
Q  303 ttctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||| |||| ||||    
T  13801732 ttctaattccttttcatctctttcaattcatttccactgatgaatttgtttcctttacttcccaataatttatttcatgcttatgtttct 13801821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 103 - 392
Target Start/End: Original strand, 35039488 - 35039782
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||||||| |||||||||||| || |||||||||||||||||     |||||||||||||||||||||  |||||||||||||||||    
T  35039488 gcacttggttcggatgaattcggatgacttttgcgctgaaccgcgcggtttggttcggtttgcggtttgcatctcaacaaccaaaccaaaccaaaccaaa 35039587  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||      
T  35039588 ccgcaagaataatgaatgttacttaaacatgtactagcccaattacatagcccaagaataatctcttttgattcgatttttccattgttgcaccatcaaa 35039687  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||| ||||    
T  35039688 ttcaattctaattcctttccatctcttttaattcatttccagtgatgaatttgtttccttttcttcccaataatttgtttcatgcttatgtttct 35039782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 121 - 380
Target Start/End: Complemental strand, 33550838 - 33550574
Alignment:
Q  121 ttcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaata 215  Q
    ||||||| ||||||||||| |||||||||||||||||     |||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||    
T  33550838 ttcagattacttttgcactgaaccgcgcggtttggttcggtttgcggtttgcatctcagcaaccgaaccgaaccaaaccaaaccgcaagaataatgaata 33550739  T
Q  216 ttacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattccttt 315  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33550738 ttacttaaacatgtactagcccaattacatagcccaagaataatctcttttgattcgatttttccattgttgcaccatcaggttcgattctaattccttt 33550639  T
Q  316 ccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcat 380  Q
    | |||||||| |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||    
T  33550638 cgatctcttttaattcatttctagtgatgaatttgtttccttttcttcccaataatttgtttcat 33550574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 104 - 392
Target Start/End: Complemental strand, 25137675 - 25137383
Alignment:
Q  104 cacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtttg----cggtttgcatctcaacaactgaaccaaaccaaaccaaacc 199  Q
    ||||| |||| ||||||||| ||||||||||||||| |||||||||||||||||||    |||| ||||||||| |||| |||||||||  |||||||||    
T  25137675 cacttggttcggatgaattcggatgacttttgcactgaaccgcgcggtttggtttggttgcggtatgcatctcatcaaccgaaccaaactgaaccaaacc 25137576  T
Q  200 gcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggtt 299  Q
     ||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| |||||||||||| || | |||||||||||||||    
T  25137575 acaataataatgaatattacttaaacatgtactatcccaattacatagcccaagaataatctcttttgattcgattttttcaatattgcaccatcaggtt 25137476  T
Q  300 cgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    | |||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| |||| ||||    
T  25137475 caattctaattcatttccttctctttcaattcatttccagtgatgaatttgtttccttttctttccaataatttgtttcatgcttatgtttct 25137383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 151 - 392
Target Start/End: Complemental strand, 15860207 - 15859967
Alignment:
Q  151 tttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctc 250  Q
    |||||||||| ||||||| |||| |||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15860207 tttggtttgcagtttgcacctcaccaaccgaaccaaaccaaaccaaactgcaagaataatgaatattaattaaacatgtactagcccaattacatagctc 15860108  T
Q  251 aagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttg 350  Q
    ||||||||||| ||| |||| || |||||||||||||||||||||| | |||||||||||| |||| ||||||||||||||||||  |||||||||||||    
T  15860107 aagaataatctcttttgattaga-ttttccattgttgcaccatcagttccgattctaattcttttctatctctttcaattcatttttagtgatgaatttg 15860009  T
Q  351 tttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    |||| |||||||| |||||||||||||||||| |||| ||||    
T  15860008 tttcctttacttctcaataatttgtttcatgcttatgtttct 15859967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 125 - 381
Target Start/End: Complemental strand, 10591349 - 10591099
Alignment:
Q  125 gatgacttttgcactaaaccgcgcggtttg-----gtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaatattac 219  Q
    ||||||||||||||| |||||||||||| |     ||||||||||||| |||||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  10591349 gatgacttttgcactgaaccgcgcggttcgattcggtttgcggtttgcgtctcaacaacagaaccaaaccaaactgaaccgcaagaataatgaatattac 10591250  T
Q  220 ttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctttccat 319  Q
    ||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||    
T  10591249 ttaaacatgtaatagcccaattacatagctcaagaataatgtctttcgattcgattttttcattgttgtaccatcaggttcgattctaattcatttccat 10591150  T
Q  320 ctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatg 381  Q
    ||||||           ||||||| |||||||||| ||||||||||||||||||||||||||    
T  10591149 ctcttt-----------cagtgattaatttgtttcttttacttcccaataatttgtttcatg 10591099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 103 - 380
Target Start/End: Original strand, 10390590 - 10390858
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| |||||||||| |||||||||||||| |||||||||||| ||||     |||||||||||||||| |||| ||||||||||||||||||    
T  10390590 gcacttggttcggatgaattcaaatgacttttgcactgaaccgcgcggttcggttcgatttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaa 10390689  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaa-gaataatctttttcgattcgatttttccattgttgcaccatcag 296  Q
    |||||||||||||||||| ||               ||| |||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  10390690 ccgcaagaataatgaatagta---------------gccaaattacgtagctcaaagaataatctttttcgattcaatttttccattgttgcaccatcag 10390774  T
Q  297 gttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcat 380  Q
     ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||    
T  10390775 attcgattttaattcctttccatctctttcaattcatttccagtgatgaatttgtttcctttatttctcaataatttgtttcat 10390858  T

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Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 10493997 - 10494079
Alignment:
Q  154 ggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcc 236  Q
    ||||||| |||||||||||| ||||| |||||||||||||||||| |||||||||||   | |||||||||| ||||||||||    
T  10493997 ggtttgcagtttgcatctcagcaactaaaccaaaccaaaccaaactgcaagaataatcgttgttacttaaacttgtactagcc 10494079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 12271015 - 12270905
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||| ||| ||||||||||  ||| |||||||||||| ||||     |||||||||||||||| |||| ||||||||||||||||||    
T  12271015 gcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaa 12270916  T
Q  198 ccgcaagaata 208  Q
    |||||| ||||    
T  12270915 ccgcaaaaata 12270905  T

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Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 5866682 - 5866742
Alignment:
Q  148 cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaata 208  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  5866682 cggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 5866742  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 353
Target Start/End: Original strand, 10494223 - 10494262
Alignment:
Q  314 ttccatctctttcaattcatttccagtgatgaatttgttt 353  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  10494223 ttccatctccttcaattcattttcagtgatgaatttgttt 10494262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 104 - 392
Target Start/End: Original strand, 36103162 - 36103455
Alignment:
Q  104 cacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtt-----tggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaac 198  Q
    ||||| |||| ||||||||||||||||||||||||| ||||||||||||     |||||||  |||||||||||| |||| |||||||||||||||||||    
T  36103162 cacttggttcggatgaattcagatgacttttgcactgaaccgcgcggttcgttttggtttgtagtttgcatctcagcaaccgaaccaaaccaaaccaaac 36103261  T
Q  199 cgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggt 298  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||    
T  36103262 cgcaagaataatgaatattacttgaacatgtactagcccaactacatagctcaagaataatcgtttttgattcgatttttccattgttgcaccatcaagt 36103361  T
Q  299 tcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||| |||| ||||    
T  36103362 tcgattctaattcctttccatctctttcaattcatttacagtgatgaatttgtttcatttactttccaataatttgtttgatgcttatgtttct 36103455  T

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Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 103 - 381
Target Start/End: Original strand, 2226433 - 2226716
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggttt-----ggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||||||| ||||||||||||||| ||||||||||||      |||||||||||||||||||| |||| ||||||||||||||||||    
T  2226433 gcacttggttcggatgaattcggatgacttttgcacttaaccgcgcggttcagttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaa 2226532  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||    
T  2226533 ccgccagaataatgaatattacttaaacatgtattagcccaattacatagctcatgaataatctcttttgattcgatttttccattgttgcaccatcagg 2226632  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatg 381  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  2226633 ttcgattctaattcctttccatctctttcaattcatttcctgtgatgaatatgtttcctttacttcccaataatttgtttcatg 2226716  T

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Target: chr5; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 103 - 392
Target Start/End: Original strand, 12680625 - 12680919
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtt-----tggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||||||||||||| ||||||||||||| | ||||||||||||     ||||||||||||||||||||| |||| ||||||||||||||||||    
T  12680625 gcacttggttcagatgaattcggatgacttttgcaatgaaccgcgcggtttggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaa 12680724  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| || || |||||||| ||| |||||||||||||||||||||||||||||||    
T  12680725 ccgcaagaatgatgaatattacttaaacatgtactagcccaattacataacttaaaaataatctcttttgattcgatttttccattgttgcaccatcagg 12680824  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||  |||||||||||||||||| |||| ||||    
T  12680825 ttcgattctaattcctttccatctctttcaattcatttcaagtgatgaatttgtttcctttacttttcaataatttgtttcatgcttatgtttct 12680919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 115 - 382
Target Start/End: Original strand, 30265360 - 30265626
Alignment:
Q  115 gatgaattcagatgacttttgcactaaaccgcgcggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaat 214  Q
    |||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||| |||| |||||||| ||||||||| ||||||||||||||||    
T  30265360 gatgaattcagatgacttttgcactaaaccgtacggttcggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaatcgcaagaataatgaat 30265459  T
Q  215 attacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctt 314  Q
    ||||||||| ||||| |||||||||||||||||||||| ||||| |  |||| |||||||||||||||||||||||||||| ||||||||||||||  ||    
T  30265460 attacttaatcatgtgctagcccaattacatagctcaaaaataa-cgctttcaattcgatttttccattgttgcaccatcaagttcgattctaattattt 30265558  T
Q  315 tccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgc 382  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30265559 tccatctctttcaattcatttccagtgatgaatttgtttcctttacttcccaataatttgtttcatgc 30265626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 103 - 378
Target Start/End: Original strand, 12165493 - 12165773
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcg-----cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||||||| ||||||||||||||| ||||||      ||||| ||||||| |||||||||||| |||||||||||||| ||||||||    
T  12165493 gcacttggttcggatgaattcggatgacttttgcactgaaccgcatggttcggttcggtttgcagtttgcatctcagcaactgaaccaaacgaaaccaaa 12165592  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  12165593 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctctttcgattcgatctttccattgttgcaccatcagg 12165692  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttc 378  Q
    ||| ||| |||||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||  ||||||||||||||    
T  12165693 ttcaattttaattccttttcatctctttcgatttatttccagtgatgaatttgtttcctttacttgtcaataatttgtttc 12165773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 105 - 392
Target Start/End: Complemental strand, 9161511 - 9161221
Alignment:
Q  105 acttagttcagatgaattcagatgacttttgcactaaaccgcg-----cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaacc 199  Q
    |||| |||| ||||||||||||||||||||||||| ||||| |     ||||| ||||||||||||| |||||| |||| ||||||||||||||| ||||    
T  9161511 acttggttcggatgaattcagatgacttttgcactgaaccgtgcggttcggttcggtttgcggtttgaatctcagcaaccgaaccaaaccaaacccaacc 9161412  T
Q  200 gcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggtt 299  Q
    ||||||||||||||||||||||||| ||| ||||||||||  ||||||||||  |||||||| ||| ||||||||||||||||||||||||||||| |||    
T  9161411 gcaagaataatgaatattacttaaatatgcactagcccaa--acatagctcagaaataatctcttttgattcgatttttccattgttgcaccatcaagtt 9161314  T
Q  300 cgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    | |||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| ||||    
T  9161313 caattctaattcctttccatctctttgaattcatttccagtgatgaatttatttcctttacttcccaataatttgtttcatgcttatgtttct 9161221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 128 - 392
Target Start/End: Original strand, 332856 - 333127
Alignment:
Q  128 gacttttgcactaaaccgcgc-----ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaatattactta 222  Q
    |||||||||||| ||||||||     ||||||||||||||||||||||||| || | |||||||||||||| ||||||||||||||||||||||||||||    
T  332856 gacttttgcactgaaccgcgcagttcggtttggtttgcggtttgcatctcagcatccgaaccaaaccaaactaaaccgcaagaataatgaatattactta 332955  T
Q  223 aacatgtactagcccaattacata--gctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctttccatc 320  Q
    |||||||||| |||||||||||||  ||||||||||||||| ||| ||||||||||||||||  ||||||||||| |||||||||||||||||||| |||    
T  332956 aacatgtactggcccaattacatatagctcaagaataatctattttgattcgatttttccataattgcaccatcaagttcgattctaattcctttctatc 333055  T
Q  321 tctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||| ||||    
T  333056 tctttcaattcatttcccgtgatgaatttatttcttttacttcccaataatttgtttcatgcttatgtttct 333127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 103 - 392
Target Start/End: Original strand, 32520775 - 32521064
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcg-----cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||||||| ||||||||||||| | |||||||     |||||||||||||| | ||||||||| |     |||| ||||||||||||    
T  32520775 gcacttggttcggatgaattcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcgatctgcatctcagc-----aaccgaaccaaaccaaa 32520869  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||  | ||||||||||| ||| |||||||||||| ||||||||||||||||||    
T  32520870 ccgcaagaatgatgaatattacttaaagatgtactagcccaattacataatttaagaataatctcttttgattcgattttttcattgttgcaccatcagg 32520969  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    |||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  32520970 ttcgattctagttcatttccatctctttcaattcatttcaagtgatgaatttgtttcttttacttcccaataatttgtttcatgcttatgtttct 32521064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 103 - 392
Target Start/End: Complemental strand, 38434218 - 38433924
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcg-----cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| ||| |||||||||  ||||||||||||||| ||||| |     ||||||| ||||||||||| |||||| |||| ||||||||||||||||||    
T  38434218 gcacttggtttagatgaatttggatgacttttgcactgaaccgtgaggttcggtttgatttgcggtttgtatctcagcaaccgaaccaaaccaaaccaaa 38434119  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||  ||||||||||| |||  |||||||||||||||||||||||||||| |    
T  38434118 ccgcaagaataagaaatattacttaaacttgtactagcccaattacatagcctaagaataatctcttttaattcgatttttccattgttgcaccatcacg 38434019  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    |||||||||||||| ||| |||||| || |||||||||||| |||||||||| |||  ||| |||||||||||||||||||| || |||| ||||    
T  38434018 ttcgattctaattctttttcatctcctttaattcatttccaatgatgaatttattttcttttcttcccaataatttgtttcacgcttatgtttct 38433924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 212 - 378
Target Start/End: Complemental strand, 35893405 - 35893238
Alignment:
Q  212 aatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattc 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||| | |||||||||||||    
T  35893405 aatattacttaaacatgtactagcccaattacatagctcaagaataatctctttcgatttgattttttcattgttgcaccatcacgctcgattctaattc 35893306  T
Q  312 c-tttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttc 378  Q
    | ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35893305 cttttccatctttttcaattcatttccagtgatgaatttgtttcctttacttcccaataatttgtttc 35893238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 115 - 392
Target Start/End: Complemental strand, 23781225 - 23780972
Alignment:
Q  115 gatgaattcagatgacttttgcactaaaccgcgcggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaat 214  Q
    ||||| ||||||||||||||||||| ||| |||||||| ||||  |||||||||||||| |||||||||||| |||||||||||||||| ||||||||||    
T  23781225 gatgatttcagatgacttttgcactgaactgcgcggttcggtt--cggtttgcatctcagcaactgaaccaagccaaaccaaaccgcaaaaataatgaat 23781128  T
Q  215 attacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctt 314  Q
    |||                 ||||||||| ||||||||||||||||| ||| |||| |||||||||||||||| |||||| |||||||||||||||||||    
T  23781127 att-----------------cccaattacttagctcaagaataatctcttttgatttgatttttccattgttgtaccatcgggttcgattctaattcctt 23781045  T
Q  315 tccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    |||||||||||||||||||||||     |||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  23781044 tccatctctttcaattcatttcc-----tgaatttgtttcctttacttcccaataatttgtttcatgcttatgtttct 23780972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 115 - 392
Target Start/End: Complemental strand, 23868178 - 23867925
Alignment:
Q  115 gatgaattcagatgacttttgcactaaaccgcgcggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaat 214  Q
    ||||| ||||||||||||||||||| ||| |||||||| ||||  |||||||||||||| |||||||||||| |||||||||||||||| ||||||||||    
T  23868178 gatgatttcagatgacttttgcactgaactgcgcggttcggtt--cggtttgcatctcagcaactgaaccaagccaaaccaaaccgcaaaaataatgaat 23868081  T
Q  215 attacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctt 314  Q
    |||                 ||||||||| ||||||||||||||||| ||| |||| |||||||||||||||| |||||| |||||||||||||||||||    
T  23868080 att-----------------cccaattacttagctcaagaataatctcttttgatttgatttttccattgttgtaccatcgggttcgattctaattcctt 23867998  T
Q  315 tccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    |||||||||||||||||||||||     |||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  23867997 tccatctctttcaattcatttcc-----tgaatttgtttcctttacttcccaataatttgtttcatgcttatgtttct 23867925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 115 - 381
Target Start/End: Complemental strand, 10174575 - 10174322
Alignment:
Q  115 gatgaattcagatgacttttgcactaaaccgcgcggtttggt----ttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataat 210  Q
    ||||||||| ||||||||||||||| |||||||||||||| |    ||||||||||||||||| |||| ||||||||||||||||||||||||    |||    
T  10174575 gatgaattcggatgacttttgcactgaaccgcgcggtttgttcgatttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaa----aat 10174480  T
Q  211 gaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaatt 310  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||   || ||| |||||||||||| ||||||||||||||||||||||||| |||||    
T  10174479 gaatattacttaaacatgtactatcccaattacataactcaagaat---ctcttttgattcgattttttcattgttgcaccatcaggttcgattataatt 10174383  T
Q  311 cctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatg 381  Q
    | ||| |||||||||||          ||||||||||||||||| ||||||| | ||||||||||||||||    
T  10174382 cattttcatctctttca----------agtgatgaatttgtttcctttactttctaataatttgtttcatg 10174322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 103 - 382
Target Start/End: Original strand, 36176670 - 36176934
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtt-----tggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| ||||  |||||||| ||||||||||||||||||||||  ||||     ||||||||||||||||||||| |||| |||||||| |||||||||    
T  36176670 gcacttggttcgaatgaattcggatgacttttgcactaaaccgcatggttcgggttggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaa 36176769  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||                    || |||||||||||||||    
T  36176770 ccgcaagaataatgactattacttaaacgtgtactagcccaattacatagctcaagaaaaat--------------------cactgttgcaccatcagg 36176849  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgc 382  Q
    ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| ||||||||| |||||||||    
T  36176850 ttcaattctaattcctttccatctctttcgattcatttccaatgatgaatttgtttcctttactttccaataattagtttcatgc 36176934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 103 - 275
Target Start/End: Original strand, 36176439 - 36176616
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtt-----tggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| ||||  |||||||| ||||||||||||||||||||||  ||||     ||||||||||||||||||||| |||| |||||||| |||||||||    
T  36176439 gcacttggttcgaatgaattcggatgacttttgcactaaaccgcatggttcgggttggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaa 36176538  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatt 275  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||    
T  36176539 ccgcaagaataatgactattacttaaacgtgtactagcccaattacatagctcaagaaaaatctcttttgattcgatt 36176616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 200 - 382
Target Start/End: Complemental strand, 42545086 - 42544902
Alignment:
Q  200 gcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggtt 299  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||  || ||||| | || | |||||||||||||| ||| |    
T  42545086 gcaagaataatgaatattacttaaatatgtaatagcccaataacatagctcaagaataatctaatttgattcaacttgttcattgttgcaccataaggct 42544987  T
Q  300 cgattctaattcctttccatctctttca--attcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgc 382  Q
     |||| |||||| |||||||||||||||  ||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||    
T  42544986 tgattttaattcttttccatctctttcaatattcatttccagtgatgaatttgtttcctttacttctcaataatttatttcatgc 42544902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 186 - 392
Target Start/End: Original strand, 17084513 - 17084719
Alignment:
Q  186 aaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgt 285  Q
    |||| |||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||   ||| |||||||| ||| ||||||||||||||||| |    
T  17084513 aaccgaaccaaaccgcaagaataatcaatattacttaaacttgtactaacccaattacataatccaaaaataatctattttgattcgatttttccattat 17084612  T
Q  286 tgcaccatcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgccta 385  Q
    |||||||||| |||||| |||| ||  ||| |||||| ||||||  |||| |||||||||||||||||| ||| || ||||||||||| ||||| || ||    
T  17084613 tgcaccatcaagttcgaatctatttgtttttcatctccttcaatcaattttcagtgatgaatttgtttccttttctccccaataatttatttcacgctta 17084712  T
Q  386 tgcttct 392  Q
    || ||||    
T  17084713 tgtttct 17084719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 268 - 392
Target Start/End: Original strand, 38334684 - 38334808
Alignment:
Q  268 attcgatttttccattgttgcaccatcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaa 367  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||    
T  38334684 attcgattttcccattgttgcatcatcaggttcgattctaattcctttccatctccttcaattcatttccaatgatgaatttgtttcattttcttcccaa 38334783  T
Q  368 taatttgtttcatgcctatgcttct 392  Q
    ||||||| ||||||| |||| ||||    
T  38334784 taatttgattcatgcttatgtttct 38334808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 245 - 381
Target Start/End: Original strand, 9988586 - 9988722
Alignment:
Q  245 tagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctttccatctctttcaattcatttccagtgatg 344  Q
    |||| |||||| ||||| ||| ||||| |||||| |||| |||||||||||| ||||||| |||||||||| |||||| ||||||||||||| |||||||    
T  9988586 tagcccaagaacaatctcttttgattcaattttttcattcttgcaccatcagattcgattttaattccttttcatctccttcaattcatttctagtgatg 9988685  T
Q  345 aatttgtttcatttacttcccaataatttgtttcatg 381  Q
    |||||||||| ||| ||| | ||||||||||||||||    
T  9988686 aatttgtttccttttctttcaaataatttgtttcatg 9988722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 42545914 - 42545822
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgc-----ggtttggtttgcggtttgcatctcaacaactgaaccaaacca 190  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||     |||| ||||||||||||||||||||||||| |||||||||||    
T  42545914 gcacttggttcggatgaattcagatgacttttgcactaaaccgcgcggttcggttcggtttgcggtttgcatctcaacaaccgaaccaaacca 42545822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 666882 - 666992
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||| ||| ||||||||||  ||| |||||||||||| ||||     |||||||||||||||| |||| ||||||||||||||||||    
T  666882 gcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaa 666981  T
Q  198 ccgcaagaata 208  Q
    |||||| ||||    
T  666982 ccgcaaaaata 666992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 11917902 - 11917804
Alignment:
Q  115 gatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaata 208  Q
    ||||| ||| ||||||||||  |||||||||||||||| ||||     |||||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  11917902 gatgagttcggatgacttttagactaaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 11917804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 15068935 - 15068825
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||| ||| ||||||||||  ||| |||||||||||| ||||     |||||||||||||||||||||  |||||||||||||||||    
T  15068935 gcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcaacaaccaaaccaaaccaaaccaaa 15068836  T
Q  198 ccgcaagaata 208  Q
    |||||| ||||    
T  15068835 ccgcaaaaata 15068825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 27885697 - 27885807
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||| ||| ||||||||||  ||| |||||||||||| ||||     |||||||||||||||| |||| ||||||||||||||||||    
T  27885697 gcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaa 27885796  T
Q  198 ccgcaagaata 208  Q
    |||||| ||||    
T  27885797 ccgcaaaaata 27885807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 701626 - 701566
Alignment:
Q  148 cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaata 208  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  701626 cggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 701566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 8409395 - 8409335
Alignment:
Q  148 cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaata 208  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  8409395 cggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 8409335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 38334365 - 38334475
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||| ||| ||||||||||  ||| |||||||||||| ||||     |||||||||||||||| |||| ||||||||| ||||||||    
T  38334365 gcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaactaaaccaaa 38334464  T
Q  198 ccgcaagaata 208  Q
    |||||| ||||    
T  38334465 ccgcaaaaata 38334475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 30002407 - 30002347
Alignment:
Q  148 cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaata 208  Q
    ||||| |||||||||||| ||||||| |||| |||||||||||||||||||||||| ||||    
T  30002407 cggttcggtttgcggtttacatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 30002347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 103 - 210
Target Start/End: Complemental strand, 35893547 - 35893442
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgca 202  Q
    |||||| |||| ||||||||| ||||||||||| ||| || ||||||||  ||||  || |||||||||||||||   |  |||||||||||||||||||    
T  35893547 gcacttggttcggatgaattcggatgacttttgtactgaatcgcgcggtccggtt--cgatttgcatctcaacaatcaagtcaaaccaaaccaaaccgca 35893450  T
Q  203 agaataat 210  Q
    ||||||||    
T  35893449 agaataat 35893442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 392
Target Start/End: Complemental strand, 35893247 - 35893200
Alignment:
Q  345 aatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    |||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  35893247 aatttgtttcctttacttcccaataatttgtttcatgcttatgtttct 35893200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 35359538 - 35359464
Alignment:
Q  115 gatgaattcagatgacttttgcactaaaccgcgcggtttggtttgcggtttgcatctcaacaactgaaccaaacc 189  Q
    ||||||||| ||||| ||||||||| ||| | |||||| | ||||||||||||||||||| |||  |||||||||    
T  35359538 gatgaattcggatgatttttgcactgaacagtgcggttcgatttgcggtttgcatctcaaaaaccaaaccaaacc 35359464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 9988538 - 9988593
Alignment:
Q  181 aaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaa 239  Q
    |||||||||||||||||||||   |||||| ||||||| |||||| |||||||||||||    
T  9988538 aaccaaaccaaaccaaaccgc---aataatcaatattatttaaacttgtactagcccaa 9988593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 691172 - 691226
Alignment:
Q  149 ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaa 203  Q
    |||||| |||||||||| ||| | | |||| ||||||||||||||||||||||||    
T  691172 ggtttgatttgcggttttcattttaccaaccgaaccaaaccaaaccaaaccgcaa 691226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 23623523 - 23623469
Alignment:
Q  149 ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaa 203  Q
    ||||||||||||||||| ||| | |  ||| ||||||||||||||||||||||||    
T  23623523 ggtttggtttgcggttttcatttgacaaaccgaaccaaaccaaaccaaaccgcaa 23623469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 148 - 388
Target Start/End: Original strand, 25297856 - 25298096
Alignment:
Q  148 cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatag 247  Q
    |||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25297856 cggtttggtttgtggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatag 25297955  T
Q  248 ctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaat 347  Q
    |||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  25297956 ctcaagaataatcgcttttgattcgatttttccattgttgcaccatcaggttcgattctaatttctttccatctctttcaatttatttccagtgatgaat 25298055  T
Q  348 ttgtttcatttacttcccaataatttgtttcatgcctatgc 388  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  25298056 ttgtttcatttacttcccaataatttgtttcatgcttatgc 25298096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 103 - 392
Target Start/End: Complemental strand, 11376414 - 11376125
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||||||| ||||     ||| |||||||||||| ||||||||||||||||||||       
T  11376414 gcacttggttcggatgaattcagatgacttttgcactgaaccgcgcggttcggttcggtttgcagtttgcatctcagcaactgaaccaaaccaaacc--- 11376318  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
      ||||||||| |||||||||||||||||||||||||| ||||| |||||| |||||||||||  ||| |||||||||||||||||||||||||||||||    
T  11376317 --gcaagaatactgaatattacttaaacatgtactagctcaattgcatagcccaagaataatcgcttttgattcgatttttccattgttgcaccatcagg 11376220  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  11376219 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcctttacttcccaataatttgtttcatgcttatgtttct 11376125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 103 - 392
Target Start/End: Original strand, 44979325 - 44979619
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttg-----gtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||||||| ||||| ||||||||| ||||||||||||||     ||||||||||||||||||| | || ||||||||||||||||||    
T  44979325 gcacttggttcggatgaattcggatgaattttgcactgaaccgcgcggtttgatttggtttgcggtttgcatctcagctaccgaaccaaaccaaaccaaa 44979424  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||| ||| ||||||||||||||||||||||||||| |||    
T  44979425 ccgcaagaataatgaatgttacttaaacatgtactagcccaattacatagcccaggaataatctcttttgattcgatttttccattgttgcaccatgagg 44979524  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||||| |||| ||||    
T  44979525 ttcaattctaattcctttccatctcttttaattcatttccagtgatgaatttgtttccttttctttccaataatttgcttcatgcttatgtttct 44979619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 125 - 392
Target Start/End: Complemental strand, 44035820 - 44035548
Alignment:
Q  125 gatgacttttgcactaaaccgcgcggtttggtttg-----cggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaatattac 219  Q
    ||||||||||||||| |||||||||||| ||||||     |||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||    
T  44035820 gatgacttttgcactgaaccgcgcggttcggtttggtttacggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaataatgaatattac 44035721  T
Q  220 ttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctttccat 319  Q
    |||||||||||||||| || ||||||| |||||||||||||| ||| |||||||||||| ||||||||||| |||| |||||||||||||||||||||||    
T  44035720 ttaaacatgtactagctcagttacataactcaagaataatctcttttgattcgattttttcattgttgcacgatcaagttcgattctaattcctttccat 44035621  T
Q  320 ctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| ||| |||| ||||    
T  44035620 ctctttcaattcatttccagtgatgaatttgtttcctttacttccaaatattttgtttcttgcttatgtttct 44035548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 148 - 392
Target Start/End: Original strand, 17916458 - 17916704
Alignment:
Q  148 cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatag 247  Q
    |||||||||||| ||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17916458 cggtttggtttgtggtttgcatctcagcaaccgagccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatag 17916557  T
Q  248 ctcaagaataatctttttcgattcgatttttccattgttgcaccatc--aggttcgattctaattcctttccatctctttcaattcatttccagtgatga 345  Q
    |||||||||||||| ||| |||||  |||||||||| ||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17916558 ctcaagaataatctcttttgattcattttttccattattgcaccatcagaggttcgattataattcctttccatctctttcaattcatttccagtgatga 17916657  T
Q  346 atttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||||  ||||||||| ||||||||||||||||| |||| ||||    
T  17916658 atttgttttctttacttccaaataatttgtttcatgcttatgtttct 17916704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 103 - 392
Target Start/End: Original strand, 19936675 - 19936964
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| |||||||||||||| ||||| |||| ||| |||||||| ||||     ||| ||||| |||||| ||||     ||||||||||||||    
T  19936675 gcacttggttcggatgaattcagatgtctttttcactgaactgcgcggttcggttcggtttgcagtttgtatctcagcaac-----caaaccaaaccaaa 19936769  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    ||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| | ||| |||||||||||| |||||||||||||||| |    
T  19936770 ccgcaagaataatgaatattacttatacatgtactagctcaaatacatagctcaagaataatatattttgattcgattttttcattgttgcaccatcatg 19936869  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  19936870 ttcgattctaatttctttccatctcattcaattcatttccagtgctgaatttgtttcctttacttcccaataatttgtttcatgcttatgtttct 19936964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 104 - 392
Target Start/End: Complemental strand, 34910841 - 34910547
Alignment:
Q  104 cacttagttcagatgaattcagatgacttttgcactaaaccgcgcg----------gtttggtttgcggtttgcatctcaacaactgaaccaaaccaaac 193  Q
    ||||| |||| ||||||||||||||||||||||| |||||||||||          ||||||||| ||||||| |||| | |||| ||| ||||||||||    
T  34910841 cacttggttcggatgaattcagatgacttttgcaataaaccgcgcgtttcggttcggtttggtttacggtttgaatctgagcaaccgaaacaaaccaaac 34910742  T
Q  194 caaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccat 293  Q
    |     |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| | ||| |||||||||||||||||||||||||||    
T  34910741 c-----gcaagaataatgaatattacttaaacatgtactaacccaattacatagcccaagaataatatcttttgattcgatttttccattgttgcaccat 34910647  T
Q  294 caggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttac-ttcccaataatttgtttcatgcctatgcttct 392  Q
    || ||||||||||||||| ||| ||| ||| ||||||||||| | |||||||||||||||| ||| | |||||||||||||||||||||| |||| ||||    
T  34910646 caagttcgattctaattcgttttcatttctctcaattcattttctgtgatgaatttgtttccttttctttcccaataatttgtttcatgcttatgtttct 34910547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 148 - 316
Target Start/End: Complemental strand, 18360283 - 18360115
Alignment:
Q  148 cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatag 247  Q
    ||||||||||| | |||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  18360283 cggtttggtttacagtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatcaatattacttaaacttgtactagcccaattacatag 18360184  T
Q  248 ctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctttc 316  Q
    | | | |||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  18360183 cccgaaaataatctcttttgattcgatttttccattgttgcaccatcatgttcgattctaatttctttc 18360115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 268 - 392
Target Start/End: Complemental strand, 20420562 - 20420438
Alignment:
Q  268 attcgatttttccattgttgcaccatcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaa 367  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||    
T  20420562 attcgatttttccattgttgcatcatcaggtttgattctaattcctttccatctccttcaattcatttccaatgatgaatttgtttcattttcttcccaa 20420463  T
Q  368 taatttgtttcatgcctatgcttct 392  Q
    ||||||| ||||||| |||| ||||    
T  20420462 taatttgattcatgcttatgtttct 20420438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 312 - 392
Target Start/End: Complemental strand, 18357589 - 18357509
Alignment:
Q  312 ctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||    
T  18357589 ctttccatcttcttcaattcatttccagtgatgaatttgtttcattttcttcccaataatttgtttcatgcttatgtttct 18357509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 9811849 - 9811739
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||| ||| ||||||||||  ||| |||||||||||| ||||     |||||||||||||||| |||| ||||||||||||||||||    
T  9811849 gcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaa 9811750  T
Q  198 ccgcaagaata 208  Q
    |||||| ||||    
T  9811749 ccgcaaaaata 9811739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 42785130 - 42785191
Alignment:
Q  148 cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataa 209  Q
    ||||||||||||||||||||||||||  ||| ||||||||||||||||||||| ||||||||    
T  42785130 cggtttggtttgcggtttgcatctcagaaaccgaaccaaaccaaaccaaaccgtaagaataa 42785191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 20420887 - 20420777
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||| ||| ||||||||||  ||| |||||||||||| ||||     |||||||||||||||| |||  ||||||||||||||||||    
T  20420887 gcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaa 20420788  T
Q  198 ccgcaagaata 208  Q
    |||||| ||||    
T  20420787 ccgcaaaaata 20420777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 195
Target Start/End: Complemental strand, 16579099 - 16579002
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaacca 195  Q
    |||||| |||| ||||| ||| ||||||||||  ||| |||||||||||| ||||     |||||||||||||||| |||||||||||||||||||||    
T  16579099 gcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaactgaaccaaaccaaacca 16579002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 36412961 - 36413021
Alignment:
Q  148 cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaata 208  Q
    ||||| |||||||||||||||||||| |||  |||||||||||||||||||||||| ||||    
T  36412961 cggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 36413021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 44086010 - 44085956
Alignment:
Q  149 ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaa 203  Q
    ||||||||||| ||||| ||| ||| |||| ||||||||||||||||||||||||    
T  44086010 ggtttggtttgtggttttcatttcaccaaccgaaccaaaccaaaccaaaccgcaa 44085956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 12884868 - 12884840
Alignment:
Q  175 caactgaaccaaaccaaaccaaaccgcaa 203  Q
    |||||||||||||||||||||||||||||    
T  12884868 caactgaaccaaaccaaaccaaaccgcaa 12884840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 41166673 - 41166625
Alignment:
Q  151 tttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaacc 199  Q
    ||||||||||||||| ||| | | |||| ||||||||||||||||||||    
T  41166673 tttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaacc 41166625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 104 - 382
Target Start/End: Original strand, 6003944 - 6004227
Alignment:
Q  104 cacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaac 198  Q
    ||||| |||| ||||||||| ||||||||||||||| ||||||| |||||||||     |||||||||||||||| | || |||||||||||||||||||    
T  6003944 cacttggttcggatgaattcggatgacttttgcactgaaccgcgaggtttggttcggtttgcggtttgcatctcagctaccgaaccaaaccaaaccaaac 6004043  T
Q  199 cgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggt 298  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  6004044 cgcaagaataatgaatgttacttaaacatgtactagcccaattacatagcccaagaataatctcttttgattcgatttttccattgttgcaccatcaggt 6004143  T
Q  299 tcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgc 382  Q
    || |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  6004144 tcaattctaattcctttccatctcttttaattcatttccagtgatgaatttgtttccttttcttcccaataatttgtttcatgc 6004227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 103 - 392
Target Start/End: Original strand, 21586402 - 21586690
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgca 202  Q
    |||||| |||| ||||||||  |||||||||||||||||||||||||||| ||||||| |||||||||||| |||| |||||||||||| ||||| ||||    
T  21586402 gcacttggttcggatgaatttggatgacttttgcactaaaccgcgcggttcggtttgcagtttgcatctcagcaaccgaaccaaaccaa-ccaaatcgca 21586500  T
Q  203 agaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcga 302  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  21586501 agaataatgaatattacttaaacatgtactagccaaattacatagttcaagaataatatctttcgattcgatttttccattgttgcaccatgaggttcga 21586600  T
Q  303 ttctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||| || ||||||||||||||| |||| ||||    
T  21586601 ttctaattcctttccatctctttcaattcatttccggtgatgaatttgtttcctttatttctcagtaatttgtttcatgcttatgtttct 21586690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 190 - 392
Target Start/End: Original strand, 50562223 - 50562425
Alignment:
Q  190 aaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgca 289  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  50562223 aaaccaaaccccaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctctttcgattcgatttttccattgttgca 50562322  T
Q  290 ccatcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgct 389  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| |||| |    
T  50562323 ccatcaggttcgattctaattcctttccatctctttcaatttattttcagtgatgaatttgtttcatttacttccaaataatttgtttcatgcttatgtt 50562422  T
Q  390 tct 392  Q
    |||    
T  50562423 tct 50562425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 103 - 382
Target Start/End: Original strand, 35531712 - 35531991
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||||||||| ||||||||||||| |||||| |||||  |||     ||| |||||||||||| |||| |||||     ||||||||    
T  35531712 gcacttggttcggatgaattcaggtgacttttgcactgaaccgcacggttcagttcgatttgcagtttgcatctcagcaaccgaacc-----aaaccaaa 35531806  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||  |||||||||||||||||||||||||||| |    
T  35531807 ccgcaagaataatgaatattacttaaacatgtactagcccaattgcatagctcaagaataatcgttttttattcgatttttccattgttgcaccatcatg 35531906  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgc 382  Q
    ||||||||||||||||||||||||||||||||||||||||  | |||||| |||||| |||||||||||||||||||||||||||    
T  35531907 ttcgattctaattcctttccatctctttcaattcatttccgtttatgaatgtgtttcctttacttcccaataatttgtttcatgc 35531991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 120 - 392
Target Start/End: Complemental strand, 43030923 - 43030666
Alignment:
Q  120 attcagatgacttttgcactaaaccgcgcggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa-ccgcaagaataatgaatatta 218  Q
    |||| ||||||||||||||| |||  ||||||| |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||       
T  43030923 attcggatgacttttgcacttaactacgcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaaccgcaagaataatgaata--- 43030827  T
Q  219 cttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctttcca 318  Q
                |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43030826 ------------ctagccaaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaagttcgattctaattcctttcca 43030739  T
Q  319 tctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||||||||||| ||||||||||||||| |||| |||| |||||||||||||||||||||| |||| ||||    
T  43030738 tctctttcaattcatctccagtgatgaattt-tttcctttatttcccaataatttgtttcatgcttatgtttct 43030666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 125 - 380
Target Start/End: Complemental strand, 32880812 - 32880547
Alignment:
Q  125 gatgacttttgcactaaaccgcgc-----ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaatattac 219  Q
    ||||||||||||||| ||||||||     |||||||||| |||||||||||||| |||| |||||||||||     ||||||||||| ||||||||||||    
T  32880812 gatgacttttgcactgaaccgcgcagttcggtttggtttacggtttgcatctcagcaaccgaaccaaacca-----aaccgcaagaaaaatgaatattac 32880718  T
Q  220 ttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctttccat 319  Q
    ||||||||||||||| ||||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  32880717 ttaaacatgtactagtccaattacatagctcaagtttaatctctttcgatttgatttttccattgttgcaccatcaggtttgattctaattcctttccat 32880618  T
Q  320 ctctttca----------attcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcat 380  Q
    ||||||||          ||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  32880617 ctctttcaattcatttccattcatttccagtgatgaatttgtttcctttacttcccaataatttctttcat 32880547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 180 - 392
Target Start/End: Complemental strand, 33002968 - 33002756
Alignment:
Q  180 gaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttc 279  Q
    ||||||||| |||||||||||||||||||||||||||| |||||| |||||| || ||||||||||||||||| |||||||| ||| |||||||||||||    
T  33002968 gaaccaaactaaaccaaaccgcaagaataatgaatatttcttaaatatgtaccagtccaattacatagctcaataataatctcttttgattcgatttttc 33002869  T
Q  280 cattgttgcaccatcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttca 379  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| | ||||||||| ||||||  ||||||||||||||||    
T  33002868 cattgttgcaccatcaggttcgattctaactcctttccatctctttcaatttatttcctgtgaagtatttgtttcctttactctccaataatttgtttca 33002769  T
Q  380 tgcctatgcttct 392  Q
    ||| |||| ||||    
T  33002768 tgcttatgtttct 33002756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 191 - 382
Target Start/End: Complemental strand, 39098378 - 39098187
Alignment:
Q  191 aaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcac 290  Q
    |||| |||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| || ||||||||| |||||||||||    
T  39098378 aaccgaaccgcaagaataatgaatattacttaaacatgtactaacacaattaaatagctcaagaataatcttttttgaatcgattttttcattgttgcac 39098279  T
Q  291 catcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgc 382  Q
    ||||||| | |||||||||| ||||||||||||||||||||||||| |||||  || ||||||| |||||||||||||||||||||| ||||    
T  39098278 catcaggattgattctaatttctttccatctctttcaattcatttcgagtgacaaacttgtttcctttacttcccaataatttgtttgatgc 39098187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 250 - 392
Target Start/End: Original strand, 27641870 - 27642012
Alignment:
Q  250 caagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaattt 349  Q
    |||||||||||| ||| ||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||    
T  27641870 caagaataatctcttttgattcgatttttccattgtagcaccatcaggttcgaatctaattcctctccatctctttcaattcattttcagtgatgaattt 27641969  T
Q  350 gtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
     |||| ||| ||||||||||||||||||||||| |||| ||||    
T  27641970 atttccttttcttcccaataatttgtttcatgcttatgtttct 27642012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 103 - 243
Target Start/End: Original strand, 48032691 - 48032836
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggt-----ttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||||||||||||| ||||||||||||| | |||||||||||     |||||||||||||||||||||| || | ||||||||||||||||||    
T  48032691 gcacttggttcagatgaattcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcagcagccgaaccaaaccaaaccaaa 48032790  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattac 243  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  48032791 ccgcaagaatcatgaatattacttaaacatgtactagcccaattac 48032836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 10369720 - 10369610
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||||||| ||||||||||  ||| |||||||||||| ||||     |||||||||||||||| |||| ||||||||||||||||||    
T  10369720 gcacttggttcggatgaattcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaa 10369621  T
Q  198 ccgcaagaata 208  Q
    |||||| ||||    
T  10369620 ccgcaaaaata 10369610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 27641772 - 27641868
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcgg-----tttggtttgcggtttgcatctcaacaactgaaccaaaccaaacc 194  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||| ||     ||||||||||||||||||||||| | ||| ||||||||||||||    
T  27641772 gcacttggttcggatgaattcagatgacttttgcactgaaccgcgtggtttgatttggtttgcggtttgcatctcagccactaaaccaaaccaaacc 27641868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 34794983 - 34794923
Alignment:
Q  148 cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaata 208  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  34794983 cggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 34794923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 33361422 - 33361312
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggttt-----ggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||| ||| ||||||||||  ||| |||||||||||||      ||||||||||||||||||| |||| ||||| ||||||||||||    
T  33361422 gcacttggttcggatgagttcggatgacttttagactgaaccgcgcggtttagttcagtttgcggtttgcatctcagcaaccgaaccgaaccaaaccaaa 33361323  T
Q  198 ccgcaagaata 208  Q
    |||||| ||||    
T  33361322 ccgcaaaaata 33361312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 35401784 - 35401894
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||| ||| ||||||||||  ||| |||||||||||| ||||     |||||||||||||||| |||  ||||||||||||||||||    
T  35401784 gcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaa 35401883  T
Q  198 ccgcaagaata 208  Q
    |||||| ||||    
T  35401884 ccgcaaaaata 35401894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 51149282 - 51149392
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtttg-----cggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||| ||| ||||||||||  ||| |||||||||||| |||| |     |||||||||||||| ||||  |||||||||||||||||    
T  51149282 gcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttacggtttgcatctcagcaacctaaccaaaccaaaccaaa 51149381  T
Q  198 ccgcaagaata 208  Q
    |||||| ||||    
T  51149382 ccgcaaaaata 51149392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 38651604 - 38651656
Alignment:
Q  151 tttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaa 203  Q
    ||||||||||||||| ||| | | |||||||||||||||||||||||||||||    
T  38651604 tttggtttgcggttttcattttaccaactgaaccaaaccaaaccaaaccgcaa 38651656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 4669207 - 4669317
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||| ||| ||||||||||  ||| |||||||||||| ||||     |||| ||||||||||| ||||  ||||||||||||| |||    
T  4669207 gcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcgatttgcatctcagcaaccaaaccaaaccaaactaaa 4669306  T
Q  198 ccgcaagaata 208  Q
    |||||| ||||    
T  4669307 ccgcaaaaata 4669317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 42362781 - 42362835
Alignment:
Q  149 ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaa 203  Q
    ||||||||||||||||| ||| | | |||||||| ||||||||||||||||||||    
T  42362781 ggtttggtttgcggttttcattttaccaactgaatcaaaccaaaccaaaccgcaa 42362835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 50578559 - 50578613
Alignment:
Q  149 ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaa 203  Q
    ||||||||||||||||| ||| | | ||| |||||| ||||||||||||||||||    
T  50578559 ggtttggtttgcggttttcattttaccaattgaaccgaaccaaaccaaaccgcaa 50578613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 51660563 - 51660617
Alignment:
Q  149 ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaa 203  Q
    |||||||||||||||||  || | | |||||||| ||||||||||||||||||||    
T  51660563 ggtttggtttgcggtttttattttaccaactgaatcaaaccaaaccaaaccgcaa 51660617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 39098429 - 39098381
Alignment:
Q  125 gatgacttttgcactaaaccgcgcggtttggtttgcggtttgcatctca 173  Q
    ||||||||||||||| ||||| |||||| | |||| |||||||||||||    
T  39098429 gatgacttttgcactgaaccgtgcggttcgatttgtggtttgcatctca 39098381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 115 - 392
Target Start/End: Original strand, 69097 - 69379
Alignment:
Q  115 gatgaattcagatgacttttgcactaaaccgcgcggt-----ttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataa 209  Q
    ||||||||| ||||||||||||| | |||||||||||     |||||||||||||||||||||| |||| ||||||||||||| ||| ||||||||||||    
T  69097 gatgaattcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaacaacccgcaagaataa 69196  T
Q  210 tgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaat 309  Q
    ||||||||||||||||||||||||||| ||||||||||| ||| |||||||| ||| |||||||||||||||||||||||||||||  ||||||||||||    
T  69197 tgaatattacttaaacatgtactagcctaattacatagcccaataataatctcttttgattcgatttttccattgttgcaccatcaaattcgattctaat 69296  T
Q  310 tcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||    
T  69297 tcctttccatctctttcaattcatttccagtgataaatttgtttcattttcttcccaataatttgtttcatgcttatgtttct 69379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 115 - 306
Target Start/End: Original strand, 77203 - 77399
Alignment:
Q  115 gatgaattcagatgacttttgcactaaaccgcgcggt-----ttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataa 209  Q
    ||||||||| ||||||||||||| | |||||||||||     |||||||||||||||||||||| |||| ||||||||||||| ||| ||||||||||||    
T  77203 gatgaattcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaacaacccgcaagaataa 77302  T
Q  210 tgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattct 306  Q
    ||||||||||||||||||||||||||| ||||||||||| ||| |||||||  ||| |||||||||||||||||||||||||||||  |||||||||    
T  77303 tgaatattacttaaacatgtactagcctaattacatagcccaataataatcacttttgattcgatttttccattgttgcaccatcaaattcgattct 77399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 103 - 392
Target Start/End: Original strand, 36827342 - 36827636
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| | |||||||  |||||||||||||| |||| | ||||||||||     |||||||||||||||| || | ||||||||||||||||||    
T  36827342 gcacttggttcggctgaattcgaatgacttttgcactgaaccacacggtttggttcggtttgcggtttgcatctcagcagccgaaccaaaccaaaccaaa 36827441  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||    
T  36827442 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagattaatctctttcgattcaatttttccattgttgcaccatcagg 36827541  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||||||||| ||||||||||||||||||| |||||||  |||||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  36827542 ttcgattctaatttctttccatctctttcaatttatttccaccgatgaatttgtttcttttacttcccaataatttgtttcatgcttatgtttct 36827636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 115 - 392
Target Start/End: Complemental strand, 30392600 - 30392319
Alignment:
Q  115 gatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataa 209  Q
    ||||||||| ||||||||||  ||| |||||||||||||||||     ||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  30392600 gatgaattcggatgacttttttactgaaccgcgcggtttggttcagtttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaataa 30392501  T
Q  210 tgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaat 309  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||||| ||||| || ||||| |||||||||    
T  30392500 tgaatattacttaaacatgtactagcccaattacatagcccaacaataatctcttttgattcgatttttccattgctgcactatgaggtttgattctaat 30392401  T
Q  310 tcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| |||| ||||    
T  30392400 tcctttccatctcttttaattcatttccagtgatgaatttgtttccttttctt-ccaataatttgtttcatgcttatgattct 30392319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 121 - 392
Target Start/End: Complemental strand, 10661662 - 10661387
Alignment:
Q  121 ttcagatgacttttgcactaaaccgcgcggtttggtttgcg----gtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaatat 216  Q
    ||||||||||||||||||| |||| ||||||||||||||      |||||||||||| ||||  ||| |||||||||||||||||||| |||||||||||    
T  10661662 ttcagatgacttttgcactgaaccacgcggtttggtttggtttgcgtttgcatctcagcaaccaaactaaaccaaaccaaaccgcaaggataatgaatat 10661563  T
Q  217 tacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctttc 316  Q
      ||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||| |||||||| ||||||| ||||||||||||||| ||||    
T  10661562 atcttaaacatgtactagcccgattacatagctcaagaattatcttttttgattcgattttttcattgttgtaccatcatgttcgattctaattcatttc 10661463  T
Q  317 catctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  10661462 caactctttcaattcatttccagtgaagaatttgtttcctttacttcccaataatttgtttcatgcttatgtttct 10661387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 103 - 380
Target Start/End: Complemental strand, 14549756 - 14549478
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||||||| ||||||||||||||| |||||||||||| ||||     |||||||||||||||| || | |||||||||||||||       
T  14549756 gcacttggttcggatgaattcggatgacttttgcactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcatccgaaccaaaccaaacc--- 14549660  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
      | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||| |||||||||    
T  14549659 --gtaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctcttttgattcgaattttccattgttgtaccatcagg 14549562  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttccc-aataatttgtttcat 380  Q
    |||||||||| |||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| ||||| |||||||||    
T  14549561 ttcgattctatttcctttccatctctttcaattaattttcagtgatgaatttgtttcctttacttcccaaataaattgtttcat 14549478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 120 - 392
Target Start/End: Original strand, 18169598 - 18169870
Alignment:
Q  120 attcagatgacttttgcactaaaccgcg-----cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaat 214  Q
    |||| ||| ||||||||||| |||||||     |||||||||||||||||||||||||  || | |||||||| |||||      |||||||||||||||    
T  18169598 attcggattacttttgcactgaaccgcgtggttcggtttggtttgcggtttgcatctcggcagccgaaccaaatcaaact-----gcaagaataatgaat 18169692  T
Q  215 attacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctt 314  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  18169693 attacttaaacatgtactagcccaattacatacctcaagaataatctctatcgattcgatttttccattattgcaccatcaggtttgattctaattcctt 18169792  T
Q  315 tccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| |||| ||||    
T  18169793 tccatctctttcaattcatttccagtgatgaatttgtttcctttacttgcaaataatttgtttcatgcttatgtttct 18169870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 120 - 392
Target Start/End: Original strand, 18633164 - 18633436
Alignment:
Q  120 attcagatgacttttgcactaaaccgcg-----cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaat 214  Q
    |||| ||| ||||||||||| |||||||     |||||||||||||||||||||||||  || | |||||||| |||||      |||||||||||||||    
T  18633164 attcggattacttttgcactgaaccgcgtggttcggtttggtttgcggtttgcatctcggcagccgaaccaaatcaaact-----gcaagaataatgaat 18633258  T
Q  215 attacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctt 314  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  18633259 attacttaaacatgtactagcccaattacatacctcaagaataatctctatcgattcgatttttccattattgcaccatcaggtttgattctaattcctt 18633358  T
Q  315 tccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| |||| ||||    
T  18633359 tccatctctttcaattcatttccagtgatgaatttgtttcctttacttgcaaataatttgtttcatgcttatgtttct 18633436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 115 - 379
Target Start/End: Complemental strand, 33069108 - 33068844
Alignment:
Q  115 gatgaattcagatgacttttgcactaaaccgcgcggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaat 214  Q
    ||||| ||| ||||||||||||||| |||| ||||||||| |||||||||||||||| | |||| ||||||||| |||||||||| ||| |||||| |||    
T  33069108 gatgatttcggatgacttttgcactgaaccacgcggtttgatttgcggtttgcatcttagcaaccgaaccaaacgaaaccaaaccacaaaaataatcaat 33069009  T
Q  215 attacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctt 314  Q
    ||||||||||  ||||| |||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||||  |||||||||||||||||    
T  33069008 attacttaaatttgtaccagcccaattacataactcaagaataatctcttttgatttgatttttccattgttgcaccatcaaattcgattctaattcctt 33068909  T
Q  315 tccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttca 379  Q
    | ||| || |||||||||||| ||||||||||||| |||| ||| ||||||||||||||||||||    
T  33068908 ttcatttccttcaattcattttcagtgatgaatttatttccttttcttcccaataatttgtttca 33068844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 103 - 381
Target Start/End: Complemental strand, 3682446 - 3682169
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtttg-----cggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| ||||| ||||| || |||||||||| |||| |||||||||||||||||||     |||||||||||||| |||| |||||||||||     ||    
T  3682446 gcacttggttcaaatgaaatcggatgacttttccactgaaccgcgcggtttggtttggtttgcggtttgcatctcagcaaccgaaccaaacca-----aa 3682352  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |  ||||||||||| ||| ||||| ||||||||||| || ||||||||||    
T  3682351 ccgcaagaataatgaatattacctaaacatgtactagcccaattacataacctaagaataatctcttttgattcaatttttccatttttccaccatcagg 3682252  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatg 381  Q
    ||| ||||||||| ||| |||||| |||||||||| ||||| ||| ||||||||||||||| ||||||||||| ||||||||||    
T  3682251 ttcaattctaatttcttaccatctatttcaattca-ttccactgacgaatttgtttcattttcttcccaataacttgtttcatg 3682169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 103 - 381
Target Start/End: Original strand, 36909898 - 36910165
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    ||||||||||| |||||||| ||| |||||||||| | ||| |||||||| ||||     ||||||||||||||||      ||||| ||||| ||||||    
T  36909898 gcacttagttcggatgaatttagacgacttttgcattgaactgcgcggttcggttcggtttgcggtttgcatctcag-----gaaccgaaccataccaaa 36909992  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    |||||||||||||||||||         |||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  36909993 ccgcaagaataatgaatat---------atgtactagcccaattacat-gctcaagaataatcttttt-gattccatttttccattgttgcaccatcagg 36910081  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatg 381  Q
    || ||||||||||| ||||||||||||||||||||||| | ||||||||||| |||| ||||||||||||||||||||||||||    
T  36910082 tttgattctaattcatttccatctctttcaattcattttcggtgatgaatttatttcctttacttcccaataatttgtttcatg 36910165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 110 - 289
Target Start/End: Original strand, 6200493 - 6200677
Alignment:
Q  110 gttcagatgaattcagatgacttttgcactaaaccgcgcggttt-----ggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaag 204  Q
    |||| ||||||||| ||||||||||||||| || || |||||||     |||||  ||||||||||| | ||||  ||||||||||||||||||||||||    
T  6200493 gttcggatgaattcggatgacttttgcactgaatcgtgcggtttcgttcggtttttggtttgcatcttagcaaccaaaccaaaccaaaccaaaccgcaag 6200592  T
Q  205 aataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgca 289  Q
    |||||||||||||||| ||||||||||||||||||||||||| | |||||||||||| ||| |||||||||||||||||||||||    
T  6200593 aataatgaatattactgaaacatgtactagcccaattacataacccaagaataatctcttttgattcgatttttccattgttgca 6200677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 105 - 246
Target Start/End: Complemental strand, 44673255 - 44673109
Alignment:
Q  105 acttagttcagatgaattcagatgacttttgcactaaaccgcgcggtt-----tggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaacc 199  Q
    |||| |||| ||||||||| ||||||||||||||| ||||||||||||     ||||||||||||||||||||| |||| |||||||||||||||||||     
T  44673255 acttggttcggatgaattcggatgacttttgcactgaaccgcgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaact 44673156  T
Q  200 gcaagaataatgaatattacttaaacatgtactagcccaattacata 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44673155 gcaagaataatgaatattacttaaacatgtactagcccaattacata 44673109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 3006187 - 3006283
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaacc 199  Q
    |||||| |||| ||||| ||| ||| ||||||  ||| |||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||    
T  3006187 gcacttggttcggatgagttcggattacttttagactgaaccgcgcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaacc 3006283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 5802506 - 5802602
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaacc 194  Q
    |||||| |||| ||||| ||||||||||||||  ||| |||||||||||| ||||     |||||||||||||||| ||||  ||||||||||||||    
T  5802506 gcacttggttcggatgagttcagatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccaaaccaaaccaaacc 5802602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 392
Target Start/End: Complemental strand, 44673073 - 44673010
Alignment:
Q  329 ttcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||| |||||||||||||||||  ||||||||| | |||||||||||| || |||| ||||    
T  44673073 ttcattttcagtgatgaatttgttttctttacttccaagtaatttgtttcaggcttatgtttct 44673010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 9012396 - 9012450
Alignment:
Q  149 ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaa 203  Q
    ||||||||||||||||| ||||| | |||| |||||||  |||||||||||||||    
T  9012396 ggtttggtttgcggttttcatcttaccaaccgaaccaatacaaaccaaaccgcaa 9012450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 42496533 - 42496565
Alignment:
Q  186 aaccaaaccaaaccgcaagaataatgaatatta 218  Q
    ||||||| |||||||||||||||||||||||||    
T  42496533 aaccaaatcaaaccgcaagaataatgaatatta 42496565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 103 - 392
Target Start/End: Complemental strand, 22366973 - 22366689
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||||||||||||| ||||||||||||||||||||| ||| |||||||     |||||||||||||| | ||||          |||||||||    
T  22366973 gcacttggttcagatgaattcggatgacttttgcactaaaccgtgcgatttggttcggtttgcggtttgcatcttagcaac----------caaaccaaa 22366884  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||    
T  22366883 ccgcaagaataatgaatattactcaaacatgtactagcccaattacatagctcaagaataatctctttcaattcggtttttccattgttgcaccatcagg 22366784  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  22366783 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcctttacttcccaataatttgtttcatgcttatgtttct 22366689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 103 - 382
Target Start/End: Complemental strand, 43429701 - 43429417
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcg-----cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||||||| ||||||||||||||||||||||      ||||| |||||||||||||||||||| |||| ||||||||||||||||||    
T  43429701 gcacttggttcggatgaattcggatgacttttgcactaaaccgcatggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaa 43429602  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    ||||||||||||||| |||||||||||| |||||| | |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||    
T  43429601 ccgcaagaataatgactattacttaaacgtgtactcgtccaattacatagctcaagaaaaatctcttttgattcgatttttccattgttgcaccatcagg 43429502  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgc 382  Q
    ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| ||||||||| |||||||||    
T  43429501 ttcaattctaattcctttccatctctttcgattcatttccaatgatgaatttgtttcctttactttccaataattagtttcatgc 43429417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 103 - 392
Target Start/End: Complemental strand, 13852839 - 13852547
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcg-----cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||||||| ||||||||||||||| ||||| |     |||||  ||||||||||||||||||| |||||||||||||||||||||||    
T  13852839 gcacttggttcggatgaattcggatgacttttgcactgaaccgagtggttcggttctgtttgcggtttgcatctcagcaactgaaccaaaccaaaccaaa 13852740  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    | ||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||||||| ||| |||||||||||| |||||||  |||||||||    
T  13852739 ctgcaagaataatgaatattatttaaatatgtactaactcaattacatagctcaagaataatctcttttgattcgattttttcattgtt--accatcagg 13852642  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| |||| ||||    
T  13852641 ttcgattataattcctttccatctctttcaattcatttacagtgatgaatttgtttcctttactttccaataatttgtttcatgcttatgtttct 13852547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 115 - 392
Target Start/End: Original strand, 24360857 - 24361137
Alignment:
Q  115 gatgaattcagatgacttttgcactaaaccgcgcggtttggtttg---cggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatg 211  Q
    ||||||||| ||||||||||||||  |||| | | ||| |||| |   |||||||| ||||| |||| ||||||||||||||||||||||||||||||||    
T  24360857 gatgaattcggatgacttttgcacagaaccacacagttcggttcggttcggtttgcgtctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatg 24360956  T
Q  212 aatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattc 311  Q
    | ||||||||||| |||||||||||||||||||||||||||||||||||  ||| |||||||||||| |||||||||||||||| |||| ||||||||||    
T  24360957 actattacttaaatatgtactagcccaattacatagctcaagaataatcccttttgattcgattttttcattgttgcaccatcaagttcaattctaattc 24361056  T
Q  312 ctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  24361057 ctttccatttctttcaattcatttccagtgatgaatttgtttcctttacttcccaataatttgtttcatgcttatgtttct 24361137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 115 - 377
Target Start/End: Original strand, 31876208 - 31876470
Alignment:
Q  115 gatgaattcagatgacttttgcactaaaccgcgcggtt-----tggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataa 209  Q
    ||||||||| ||||||||||||| | ||||| ||||||     ||||||||||||||||||||| |     ||||||||||||||||||||||| |||||    
T  31876208 gatgaattcggatgacttttgcaatgaaccgtgcggttcgatttggtttgcggtttgcatctcagc-----aaccaaaccaaaccaaaccgcaaaaataa 31876302  T
Q  210 tgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaat 309  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||  ||||||||||||||||||||||||||||| ||||||||||||    
T  31876303 tgaatattacttaaacatgtactagcccagttacatagctcaagaataatctcttttaattcgatttttccattgttgcaccatcagattcgattctaat 31876402  T
Q  310 tcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgttt 377  Q
    || ||||||||||||| ||||||||||||||||||| |||||||| ||||||||| ||||||||||||    
T  31876403 tcttttccatctcttttaattcatttccagtgatgactttgtttcctttacttccaaataatttgttt 31876470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 186 - 381
Target Start/End: Complemental strand, 32824041 - 32823846
Alignment:
Q  186 aaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgt 285  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||    
T  32824041 aaccaaaccaaaccgcatgaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctcctttgattcgatttttccattgt 32823942  T
Q  286 tgcaccatcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatg 381  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||  || ||||||||||||||||||||||| ||||||||||| ||||||    
T  32823941 tgcaccatcaggttcgattctaattcctttccatctatttcaattcattctcactgatgaatttgtttcatttactttccaataatttgcttcatg 32823846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 103 - 341
Target Start/End: Original strand, 42910231 - 42910469
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcg-----cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||||||| ||||||||||||||| ||||| |     ||||| |||||||||||||||||||| |     |||| ||||||||||||    
T  42910231 gcacttggttcggatgaattcggatgacttttgcactgaaccgtgcggttcggttcggtttgcggtttgcatctcagc-----aaccgaaccaaaccaaa 42910325  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||    
T  42910326 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctcttttgatttgatttttccattgttgcaccatcagg 42910425  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtg 341  Q
    | ||||||||||||||||||||||||||||||||||||||||||    
T  42910426 tccgattctaattcctttccatctctttcaattcatttccagtg 42910469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 103 - 380
Target Start/End: Original strand, 36921106 - 36921385
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggt-----ttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||||||| ||| ||||||||| | |||| ||||||     ||||||||| |||||||||||| |     |||| ||||||||||||    
T  36921106 gcacttggttcggatgaattcggattacttttgcattgaaccacgcggttcggtttggtttgcagtttgcatctcagc-----aaccgaaccaaaccaaa 36921200  T
Q  198 ccgcaagaataatgaatattacttaaacatgtacta--gcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatca 295  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||  ||| |||||||||||| ||||||||||||||||    
T  36921201 ccgcaagaataatgaatattacttaaacatgtactaacccccaattacatagctcaagaataatcgcttttgattcgattttttcattgttgcaccatca 36921300  T
Q  296 ggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcat 380  Q
    |||||||||||||||| ||||||||||||||||||||||| || |||| |||||||||| |||||||||||||||||||||||||    
T  36921301 ggttcgattctaattcttttccatctctttcaattcattttcaatgataaatttgtttcttttacttcccaataatttgtttcat 36921385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 186 - 378
Target Start/End: Complemental strand, 10070008 - 10069816
Alignment:
Q  186 aaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgt 285  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||  ||||||||||||||| |||||||||||||||| |||| ||||||||||||||    
T  10070008 aaccaaaccaaaccgcaagaataatcaatattacttaaacttgtaccggcccaattacatagcccaagaataatcttttttgatttgatttttccattgt 10069909  T
Q  286 tgcaccatcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttc 378  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||    
T  10069908 tgcaccatcaggtttgattctaattcctttccatctccttcaattcatttccaatgatgaatttgtttccttttcttcccaataatttgtttc 10069816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 103 - 392
Target Start/End: Complemental strand, 47903752 - 47903473
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttg-----gtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||||||| ||||||||||||||| |||||||| ||| |     ||||||||||||||||||| |||| |||||||| ||| |||||    
T  47903752 gcacttggttcggatgaattcggatgacttttgcactgaaccgcgcagttcgtttcggtttgcggtttgcatctcagcaaccgaaccaaaacaacccaaa 47903653  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    || |||||||||||||||               |||||| |||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||    
T  47903652 ccacaagaataatgaata---------------ctagccaaattacatagctcaagaatactatttttcgattcgattttttcattgttgcaccatcagg 47903568  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||| ||||    
T  47903567 ttcgattataattcatttccatatctttcaattcatttccagtgatgaatttgtttcctttatttcccaataatttgtttcatgcttatgtttct 47903473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 175 - 381
Target Start/End: Complemental strand, 48675568 - 48675362
Alignment:
Q  175 caactgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgat 274  Q
    |||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||||| || ||||| || ||| | || |||    
T  48675568 caactgaaccaaacaaaatcaaaccgtaagaataataaatattacttaaacatgtattagcctaattacatagctaaaaaataacctcttttggtttgat 48675469  T
Q  275 ttttccattgttgcaccatcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttg 374  Q
    | ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| |||||||||||||||||| ||||||||| |||||||||    
T  48675468 tattccattgttgcaccatcaggtttgattctaattcatttccatctctttgaattcattttcagtgatgaatttgtttcctttacttcctaataatttg 48675369  T
Q  375 tttcatg 381  Q
    |||||||    
T  48675368 tttcatg 48675362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 115 - 303
Target Start/End: Original strand, 27054290 - 27054483
Alignment:
Q  115 gatgaattcagatgacttttgcactaaaccgcgc-----ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataa 209  Q
    ||||||||||||||||||||||||||||||| ||     ||||||||||||||||||||| ||| |||  |||||||||||||||||||| |||||||||    
T  27054290 gatgaattcagatgacttttgcactaaaccgtgcgatttggtttggtttgcggtttgcatatcagcaatcgaaccaaaccaaaccaaaccacaagaataa 27054389  T
Q  210 tgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgat 303  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| |||||||||||| |||||||||||||||| |||||||    
T  27054390 tgaatattacttaaatatgtactagcccaattacataactcaagaataatctcttttgattcgattttttcattgttgcaccatcatgttcgat 27054483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 107 - 294
Target Start/End: Original strand, 18672774 - 18672966
Alignment:
Q  107 ttagttcagatgaattcagatgacttttgcactaaaccgcgc-----ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgc 201  Q
    ||||||||||||||||| ||||| ||||||| |  |||||||     |||| |||||| ||||||||||||| |||| ||||||||||||||||||||||    
T  18672774 ttagttcagatgaattcggatgatttttgcattggaccgcgcagttcggttcggtttgtggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgc 18672873  T
Q  202 aagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatc 294  Q
    || |||||| |||||||||||||| |||||||||||||||||||||| || ||||||||| ||| |||| |||||||| ||||||||||||||    
T  18672874 aataataatcaatattacttaaacttgtactagcccaattacatagcacaggaataatctcttttgattagatttttctattgttgcaccatc 18672966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 115 - 381
Target Start/End: Original strand, 31982233 - 31982480
Alignment:
Q  115 gatgaattcagatgacttttgcactaaaccgcgcggtttggtttg-----cggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataa 209  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||     |||||||||||| | ||||          ||||||||||||||| |||||    
T  31982233 gatgaattcagatgacttttgcactgaactgcgcggtttggtttgatttgcggtttgcatcttagcaac----------caaaccaaaccgcaaaaataa 31982322  T
Q  210 tgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaat 309  Q
    | |||||||||||||  ||||| |||||||||||||||| |||||||||||| ||| |||| ||||||||||||||||||||||||  ||||||||||||    
T  31982323 tcaatattacttaaatttgtaccagcccaattacatagcccaagaataatctcttttgatttgatttttccattgttgcaccatcaaattcgattctaat 31982422  T
Q  310 tcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatg 381  Q
    |||||              ||||||| |||||||||||||||||| ||| ||||||||||||||||||||||    
T  31982423 tcctt--------------ttcattttcagtgatgaatttgtttccttttcttcccaataatttgtttcatg 31982480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 103 - 311
Target Start/End: Complemental strand, 5933151 - 5932944
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt----------tgcggtttgcatctcaacaactgaaccaaaccaaa 192  Q
    |||||| |||| ||| ||||||||||||||||||||| |||||||||||| ||||          ||||||||| |||||| |||| |||||||||||||    
T  5933151 gcacttggttcggataaattcagatgacttttgcactgaaccgcgcggttcggttcggttcggtttgcggtttgtatctcagcaaccgaaccaaaccaaa 5933052  T
Q  193 ccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcacca 292  Q
    ||||| || |||||||||||      ||||||||||||||||||||||||||||||||||||||||||| |     ||||||||||||||||||||||||    
T  5933051 ccaaatcgtaagaataatga------cttaaacatgtactagcccaattacatagctcaagaataatctct-----ttcgatttttccattgttgcacca 5932963  T
Q  293 tcaggttcgattctaattc 311  Q
    |||| || |||||||||||    
T  5932962 tcagatttgattctaattc 5932944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 392
Target Start/End: Complemental strand, 36509024 - 36508929
Alignment:
Q  297 gttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||||||| || ||||||||||| ||||||| |||| | |||||||||||||||| ||| || ||||||||||||||||| || |||||||||    
T  36509024 gttcgattctatttgctttccatctccttcaattaattttcggtgatgaatttgtttccttttctccccaataatttgtttcaggcttatgcttct 36508929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 316 - 392
Target Start/End: Original strand, 18672962 - 18673038
Alignment:
Q  316 ccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||| ||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||| |||| ||||    
T  18672962 ccatctccttcaattcatttccattgatgaatttgtttccttttcttccaaataatttgtttcatgcttatgtttct 18673038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 3211756 - 3211866
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||| ||| ||||||||||  ||| |||||||||||| ||||     |||||||||||||||| |||| ||||||||||||||||||    
T  3211756 gcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaa 3211855  T
Q  198 ccgcaagaata 208  Q
    |||||| ||||    
T  3211856 ccgcaaaaata 3211866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 47070137 - 47070027
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||| ||| ||||||||||  ||| |||||||||||| ||||     |||||||||||||||| |||| ||||||||||||||||||    
T  47070137 gcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaa 47070038  T
Q  198 ccgcaagaata 208  Q
    |||||| ||||    
T  47070037 ccgcaaaaata 47070027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 10672238 - 10672178
Alignment:
Q  148 cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaata 208  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  10672238 cggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 10672178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 47204121 - 47204181
Alignment:
Q  148 cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaata 208  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  47204121 cggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 47204181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 36509086 - 36509024
Alignment:
Q  191 aaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaag 253  Q
    |||||||||||||||||||| |||||||||||||  ||||| |||||||||||||||| ||||    
T  36509086 aaccaaaccgcaagaataatcaatattacttaaatttgtacgagcccaattacatagcccaag 36509024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 1335921 - 1335882
Alignment:
Q  115 gatgaattcagatgacttttgcactaaaccgcgcggtttg 154  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1335921 gatgaattcagatgacttttgcactaaaccgcgcggtttg 1335882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 524430 - 524484
Alignment:
Q  149 ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaa 203  Q
    ||||||||||||||||| ||| | | |||| ||||||||||||||||||||||||    
T  524430 ggtttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaaccgcaa 524484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 40849379 - 40849325
Alignment:
Q  149 ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaa 203  Q
    ||||||||||||||||| ||| | | |||| ||||||||||||||||||||||||    
T  40849379 ggtttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaaccgcaa 40849325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 392
Target Start/End: Complemental strand, 5932948 - 5932883
Alignment:
Q  327 aattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||||| |||||||||||||||||| ||||||| | |||||||| |||| ||| |||| ||||    
T  5932948 aattcattttcagtgatgaatttgtttcctttactttctaataatttatttcttgcttatgtttct 5932883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 12118068 - 12117959
Alignment:
Q  104 cacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaac 198  Q
    ||||| |||| ||||| ||| ||||||||||  ||| |||||||||||| ||||     |||| ||||||||||| ||||  ||||||||||||| ||||    
T  12118068 cacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcgatttgcatctcagcaaccaaaccaaaccaaactaaac 12117969  T
Q  199 cgcaagaata 208  Q
    ||||| ||||    
T  12117968 cgcaaaaata 12117959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 382
Target Start/End: Original strand, 27054549 - 27054586
Alignment:
Q  345 aatttgtttcatttacttcccaataatttgtttcatgc 382  Q
    |||||||||| |||||||||||||||||||||||||||    
T  27054549 aatttgtttcctttacttcccaataatttgtttcatgc 27054586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 8768280 - 8768376
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaacc 194  Q
    |||||| |||| ||||| ||| ||||||||||  ||| |||||||||||| ||||     || ||||||||||||| |||| |||||||||||||||    
T  8768280 gcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgtggtttgcatctcagcaaccgaaccaaaccaaacc 8768376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 11205992 - 11206083
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaacc 189  Q
    |||||| |||| ||||| ||| ||||||||||  ||| |||||||||||| ||||     |||||||||||||||| |||| ||||||||||    
T  11205992 gcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaacc 11206083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 29628734 - 29628680
Alignment:
Q  149 ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaa 203  Q
    ||||||||||||| ||| ||| | | |||| ||||||||||||||||||||||||    
T  29628734 ggtttggtttgcgattttcattttaccaaccgaaccaaaccaaaccaaaccgcaa 29628680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 30079153 - 30079207
Alignment:
Q  149 ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaa 203  Q
    ||||||||||||||||| ||  | | |||| ||||||||||||||||||||||||    
T  30079153 ggtttggtttgcggttttcagtttagcaaccgaaccaaaccaaaccaaaccgcaa 30079207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 36509165 - 36509109
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtttg 159  Q
    |||||| |||| |||||||||| |||||||||||| | ||||| |||||| ||||||    
T  36509165 gcacttggttcggatgaattcatatgacttttgcattgaaccgtgcggttcggtttg 36509109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 37376283 - 37376235
Alignment:
Q  151 tttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaacc 199  Q
    ||||||||||||||| ||| | | |||| ||||||||||||||||||||    
T  37376283 tttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaacc 37376235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 125 - 392
Target Start/End: Original strand, 40806397 - 40806661
Alignment:
Q  125 gatgacttttgcactaaaccgcgcggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaa 224  Q
    |||||||||| |||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40806397 gatgacttttacactgaaccgcacggtttgatttgcggtttgcatctcagcaactgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaa 40806496  T
Q  225 catgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctttccatctctt 324  Q
     |||||||||| ||||||||||||||||||||||||| ||| |||||||||||| ||||||||   || |||||||||||||||||||||||||||||||    
T  40806497 tatgtactagctcaattacatagctcaagaataatctcttttgattcgattttttcattgttg---caacaggttcgattctaattcctttccatctctt 40806593  T
Q  325 tcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    |||||||||||||| |||| |||||||||| ||||||| ||||||||||||||||||| |||| ||||    
T  40806594 tcaattcatttccaatgataaatttgtttcctttactttccaataatttgtttcatgcttatgtttct 40806661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 103 - 382
Target Start/End: Original strand, 40899634 - 40899918
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||||||| |||||||||||| || |||||||||||||||||     |||||||||||||||| |||| ||||||||||||||||||    
T  40899634 gcacttggttcggatgaattcggatgacttttgcgctgaaccgcgcggtttggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaa 40899733  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| ||||||| ||| |||||||||||||||||||||||||||||      
T  40899734 ccgcaagaataatgaatgttacttaaacatgtaatagcccaattacatagcccaaggataatctcttttgattcgatttttccattgttgcaccatcaaa 40899833  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgc 382  Q
    ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| ||||||||||| |||||||    
T  40899834 ttcaattctaattcctttccatctctttaaattcatttccagtgatgaatttatttcctttacttaccaataatttgattcatgc 40899918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 115 - 392
Target Start/End: Original strand, 30193542 - 30193824
Alignment:
Q  115 gatgaattcagatgacttttgcactaaaccgcgcggtttg-----gtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataa 209  Q
    |||||||||  |||||||||||| | ||||| |||||| |     |||||| |||||||||||| |||| |||||||||||||||| |||||||||||||    
T  30193542 gatgaattcgtatgacttttgcaatgaaccgtgcggttcggttcagtttgcagtttgcatctcagcaaccgaaccaaaccaaaccataccgcaagaataa 30193641  T
Q  210 tgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaat 309  Q
    ||||||||||||||| ||||| || ||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| ||||    
T  30193642 tgaatattacttaaatatgtattatcccaattacatagctcaagaataatttcttttgattcgatttttccattgttgcaccatcaggttcgattttaat 30193741  T
Q  310 tcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  30193742 tcctttccatctctttcaattcatttacagtgatgaatttgtttcctttacttcccaataatttgtttcatgcttatgtttct 30193824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 156 - 392
Target Start/End: Original strand, 23937130 - 23937366
Alignment:
Q  156 tttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaa 255  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||||||||    
T  23937130 tttgtggtttgcatctcaacaactgaaccaaaccaaactaaaccgcaagaataataaatattacttaaacatatactagtccaattacataactcaagaa 23937229  T
Q  256 taatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttca 355  Q
    |||||| ||| |||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23937230 taatctctttagatttgatttttccattgttgcaccatcatgttctattctaattcctttccatctctttcaattcatttctagtgatgaatttgtttca 23937329  T
Q  356 tttacttcccaataatttgtttcatgcctatgcttct 392  Q
    |||| |||||||||||||||||||||| |||| ||||    
T  23937330 tttatttcccaataatttgtttcatgcttatgtttct 23937366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 121 - 392
Target Start/End: Complemental strand, 32137207 - 32136931
Alignment:
Q  121 ttcagatgacttttgcactaaaccgcg-----cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaata 215  Q
    ||||||||||||||||| | ||||| |     |||||||||||||||||||||||||| |||| |||||||| ||||||||||| ||||||| |||||||    
T  32137207 ttcagatgacttttgcaatgaaccgtgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaaccacaagaatgatgaata 32137108  T
Q  216 ttacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattccttt 315  Q
    |||||||||||||||||||||||||||||||||| ||||||||| | |||  ||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  32137107 ttacttaaacatgtactagcccaattacatagcttaagaataatttctttttattcgattttttcattgttgcaccatcaggttcgattttaattccttt 32137008  T
Q  316 ccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| |||| ||||    
T  32137007 ccatctctttcaattcatttcaagtgatgaatttgtttcctttacttcccaatcatttgtttcatgcttatgtttct 32136931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 121 - 392
Target Start/End: Complemental strand, 6333836 - 6333555
Alignment:
Q  121 ttcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaacc-----aaaccgcaagaataat 210  Q
    |||||||||||||| |||| ||||||||| || ||||     ||||| |||||||| | |||| |||||||||||||||     ||||||||||||||||    
T  6333836 ttcagatgacttttacactgaaccgcgcgattcggttcgatttgcggcttgcatcttagcaaccgaaccaaaccaaaccaaactaaaccgcaagaataat 6333737  T
Q  211 gaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaatt 310  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |||||||||||||||||||||||||||    
T  6333736 gaatattacttaaatatgtactagcccaattacatagctcaagaataatctcttttgattcaatttttccatcgttgcaccatcaggttcgattctaatt 6333637  T
Q  311 cctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  6333636 catttccatctctttcaattcatttccagtgatgaatttgtttcctttacttcccaataatttgtttcatgcttatgtttct 6333555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 103 - 380
Target Start/End: Complemental strand, 48996612 - 48996330
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtttg-----cggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||| ||||| ||||||||||||| | |||||||||||| ||||||     |||||||||||||| |||| ||||||||||||||||||    
T  48996612 gcacttggttcggatcaattcggatgacttttgcaatgaaccgcgcggttcggtttgatttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaa 48996513  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| ||| |||||||||||| ||||||||||||||||      
T  48996512 ccgcaagaataatgaatattacttaaacatgtactagcctaattacatagcctaagaataatctcttttgattcgattttttcattgttgcaccatcaaa 48996413  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcat 380  Q
    ||||||||||||||||||||| ||||||||||| |||| ||||||| |||||||||||||| |||| ||||||||||||||||    
T  48996412 ttcgattctaattcctttccacctctttcaatttattttcagtgataaatttgtttcattttcttctcaataatttgtttcat 48996330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 187 - 392
Target Start/End: Complemental strand, 10219127 - 10218922
Alignment:
Q  187 accaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgtt 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||| |||||||||||||||    
T  10219127 accaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctcatttgattagatttttccattgtt 10219028  T
Q  287 gcaccatcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctat 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||| |||    
T  10219027 gcaccatctggttcgattctaattcctttccatctctttcaattcattttcagtgatgaatttgtttcttttacttctcaataatttgtttcatgcttat 10218928  T
Q  387 gcttct 392  Q
    | ||||    
T  10218927 gtttct 10218922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 186 - 392
Target Start/End: Original strand, 8176240 - 8176446
Alignment:
Q  186 aaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgt 285  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||||||    
T  8176240 aaccaaaccaaaccgcaagaataatgaagattacttaaacatgtactagcccaattacatagcccaaaaataatctcttttgattcgatttttccattgt 8176339  T
Q  286 tgcaccatcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgccta 385  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||||||| |||| ||| ||||||||||||||||||||||| ||    
T  8176340 tgcaccatcaggttcgatcctaattcctttccatctcttttaattcattttcagttatgaatttttttctttttcttcccaataatttgtttcatgctta 8176439  T
Q  386 tgcttct 392  Q
    || ||||    
T  8176440 tgtttct 8176446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 148 - 392
Target Start/End: Complemental strand, 52345190 - 52344947
Alignment:
Q  148 cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatag 247  Q
    ||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||    
T  52345190 cggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagtccgattgcatag 52345091  T
Q  248 ctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaat 347  Q
    |||||||||| ||  ||| |||| |||||||||||| ||||| |||||||||||||||||| |  |||||| |||||||||||||| | || ||||||||    
T  52345090 ctcaagaatagtcgcttttgatttgatttttccattattgca-catcaggttcgattctaacttatttccaactctttcaattcatattcactgatgaat 52344992  T
Q  348 ttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||| ||||||| ||||||||||||||||||| |||| ||||    
T  52344991 ttgtttcctttactttccaataatttgtttcatgcttatgtttct 52344947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 186 - 392
Target Start/End: Complemental strand, 31301845 - 31301638
Alignment:
Q  186 aaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcg-attcgatttttccattg 284  Q
    |||| |||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| |||||||||||| |||||   |||||| |||| |||||    
T  31301845 aaccgaaccaaaccgcaagaataatcaatattacttaaacttgtattagcccaattacataactcaagaataattttttttttattcgactttttcattg 31301746  T
Q  285 ttgcaccatcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcct 384  Q
    |||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| |    
T  31301745 ttgcaccatcagtttcgattctaattcatttccatctccttcaattcatttccagtgatgaatttgtttccttttctttccaataatttgtttcatgctt 31301646  T
Q  385 atgcttct 392  Q
    ||| ||||    
T  31301645 atgtttct 31301638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 157 - 392
Target Start/End: Complemental strand, 43631007 - 43630790
Alignment:
Q  157 ttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaat 256  Q
    ||||||||  ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||    
T  43631007 ttgcggttgacatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatgaatattacttaaaaatgtaatagcccaactacatagctcaagaat 43630908  T
Q  257 aatctttttcgattcgatttttccattgttgcaccatcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcat 356  Q
                      |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  43630907 ------------------tttttcattgttgcaccattaagttcgattctaattcctttccatctctttcaattcatttgcagtgatgaatttgtttcct 43630826  T
Q  357 ttacttcccaataatttgtttcatgcctatgcttct 392  Q
    |||||||||||||||||||||||||| |||| ||||    
T  43630825 ttacttcccaataatttgtttcatgcttatgtttct 43630790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 268 - 358
Target Start/End: Complemental strand, 29639818 - 29639728
Alignment:
Q  268 attcgatttttccattgttgcaccatcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcattt 358  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  29639818 attcgatttttccattgttgcatcatcaggttcgattctaattcctttccatctccttcaattcatttccaatgatgaatttgtttcattt 29639728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 26477743 - 26477869
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcg-----cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||||||| ||||||||||| ||||||||| |     |||||||||||||||||||||||||| |||| |||||||||||||||||     
T  26477743 gcacttggttcggatgaattcggatgacttttgtactaaaccgtgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaat 26477842  T
Q  198 ccgcaagaataatgaatattacttaaa 224  Q
    || ||||||||||||||||||||||||    
T  26477843 ccacaagaataatgaatattacttaaa 26477869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 52345296 - 52345225
Alignment:
Q  186 aaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaata 257  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52345296 aaccgaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattgcatagctcaagaata 52345225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 5261417 - 5261517
Alignment:
Q  115 gatgaattcagatgacttttgcactaaaccgcg-----cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaataa 209  Q
    ||||||||||||||||||||||||| |||||||     ||||| ||||||||||||||||||||  ||  |||||||| |||||||||| ||||||||||    
T  5261417 gatgaattcagatgacttttgcactgaaccgcgcggttcggttcggtttgcggtttgcatctcagaaatcgaaccaaatcaaaccaaactgcaagaataa 5261516  T
Q  210 t 210  Q
    |    
T  5261517 t 5261517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 29640104 - 29639994
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||| ||| ||||||||||  ||| |||||||||||| ||||     |||||||||||||||| |||| ||||||||||||||||||    
T  29640104 gcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaa 29640005  T
Q  198 ccgcaagaata 208  Q
    |||||| ||||    
T  29640004 ccgcaaaaata 29639994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 50570572 - 50570682
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttggtt-----tgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||| ||| ||||||||||  ||| |||||||||||| ||||     |||||||||||||||| |||| ||||||||||||||||||    
T  50570572 gcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaa 50570671  T
Q  198 ccgcaagaata 208  Q
    |||||| ||||    
T  50570672 ccgcaaaaata 50570682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 42558142 - 42558082
Alignment:
Q  148 cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaata 208  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  42558142 cggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 42558082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 36078793 - 36078683
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtttg-----gtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||| ||| ||||||||||  ||| |||||||||||| |     |||||| |||||||||||| |||| ||||||||||||||||||    
T  36078793 gcacttggttcggatgagttcggatgacttttagactgaaccgcgcggttcggttcagtttgcagtttgcatctcagcaaccgaaccaaaccaaaccaaa 36078694  T
Q  198 ccgcaagaata 208  Q
    |||||| ||||    
T  36078693 ccgcaaaaata 36078683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 29643371 - 29643431
Alignment:
Q  148 cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaata 208  Q
    ||||| |||||| || |||||||||| |||| |||||||||||||||||||||||| ||||    
T  29643371 cggttcggtttgtggcttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 29643431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 5121948 - 5122002
Alignment:
Q  149 ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaa 203  Q
    ||||||||||||||||| ||| | | ||||| |||||||||||||||||||||||    
T  5121948 ggtttggtttgcggttttcattttaccaactaaaccaaaccaaaccaaaccgcaa 5122002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 45983852 - 45983798
Alignment:
Q  149 ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaa 203  Q
    ||||||||||||||||| ||| | | |||| ||| ||||||||||||||||||||    
T  45983852 ggtttggtttgcggttttcattttaccaaccgaatcaaaccaaaccaaaccgcaa 45983798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 48338859 - 48338805
Alignment:
Q  149 ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaa 203  Q
    ||||||||||||||||| ||| | | |||| |||||||||||||| |||||||||    
T  48338859 ggtttggtttgcggttttcattttaccaaccgaaccaaaccaaacaaaaccgcaa 48338805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 27743855 - 27743802
Alignment:
Q  149 ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgca 202  Q
    |||||||||||||||||  || | | |||||||||||||||||||||| |||||    
T  27743855 ggtttggtttgcggttttaattttaccaactgaaccaaaccaaaccaatccgca 27743802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 10219206 - 10219130
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcgcggtt-----tggtttgcggtttgcatctcaa 174  Q
    |||||| ||||  ||||| || |||||||||| |||| ||||||||||||     ||||||||||||||||||||||    
T  10219206 gcacttggttcgaatgaactcggatgacttttacactgaaccgcgcggttcggtttggtttgcggtttgcatctcaa 10219130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 51395281 - 51395253
Alignment:
Q  180 gaaccaaaccaaaccaaaccgcaagaata 208  Q
    |||||||||||||||||||||||||||||    
T  51395281 gaaccaaaccaaaccaaaccgcaagaata 51395253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 110 - 392
Target Start/End: Complemental strand, 106561 - 106273
Alignment:
Q  110 gttcagatgaattcagatgacttttgcactaaaccgcgcggtt-----tggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaag 204  Q
    |||| ||||||||| ||||||||||||| | ||||||||||||     |||||||||||||||||||||||||| |||||||||| |||||| |||||||    
T  106561 gttcggatgaattcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcaacaaccgaaccaaacccaaccaacccgcaag 106462  T
Q  205 aataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcaggttcgatt 304  Q
    |||||||||||||||||||||||||||||||| |||||||||||  || |||||| | |||  ||||||||||||||||||||||||||||  |||||||    
T  106461 aataatgaatattacttaaacatgtactagcctaattacatagcctaataataatttctttttattcgatttttccattgttgcaccatcaaattcgatt 106362  T
Q  305 ctaattcctttccatctctttcaattcatttccagtgatgaatttgtttca-tttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| ||||||||||||||||| |||| ||||    
T  106361 ctaattcctttccatctctttcaattcatttccagtgataaatttgtttcatttttcttccgaataatttgtttcatgcttatgtttct 106273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 181 - 392
Target Start/End: Complemental strand, 129092 - 128880
Alignment:
Q  181 aaccaaaccaaaccaaaccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttcc 280  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| |||  |||||||||||||    
T  129092 aaccaaaccaaaccaacccgcaagaataatgaatattacttaaacatgtactagcctaattacatagcccaataataatctctttatattcgatttttcc 128993  T
Q  281 attgttgcaccatcaggttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttca-tttacttcccaataatttgtttca 379  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||||||||||||||||    
T  128992 attgttgcaccatcaaattcgattctaattcctttccatctctttcaattcattttcagtgataaatttgtttcatttttcttcccaataatttgtttca 128893  T
Q  380 tgcctatgcttct 392  Q
    ||| |||| ||||    
T  128892 tgcttatgtttct 128880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 103 - 392
Target Start/End: Original strand, 40124 - 40418
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcg-----cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||||||| ||||||||||||||| |||||||     |||||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  40124 gcacttggttcggatgaattcggatgacttttgcactgaaccgcgtggctcggtttggtttgtggttttcatctcaacaaccgaaccaaaccaaaccaaa 40223  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| ||||| |||| |||||||||||| |||||||    
T  40224 ccacaagaataatgaatattacttaaacatctactagcccaattacatagctcaagaataatttcttttgattcaatttgtccattgttgcaacatcagg 40323  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgtttcatttacttcccaataatttgtttcatgcctatgcttct 392  Q
    ||| |||||||||  |||||||||||||||||||||||| |||||||||||| |||  |||||||||| ||||||||||| |||| |||| ||||    
T  40324 ttccattctaatttatttccatctctttcaattcatttcaagtgatgaatttatttactttacttccccataatttgtttaatgcttatgtttct 40418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 103 - 353
Target Start/End: Original strand, 47320 - 47575
Alignment:
Q  103 gcacttagttcagatgaattcagatgacttttgcactaaaccgcg-----cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaa 197  Q
    |||||| |||| ||||||||| ||||||||||||||| ||||||      |||||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  47320 gcacttggttcggatgaattcggatgacttttgcactgaaccgcatggctcggtttggtttgtggttttcatctcaacaaccgaaccaaaccaaaccaaa 47419  T
Q  198 ccgcaagaataatgaatattacttaaacatgtactagcccaattacatagctcaagaataatctttttcgattcgatttttccattgttgcaccatcagg 297  Q
    || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||| |||||||    
T  47420 ccacaagaataatgaatattacttaaacatctactagcccaattacatagctcaagaataatttcttttgattcgatttgtccattgttgcaacatcagg 47519  T
Q  298 ttcgattctaattcctttccatctctttcaattcatttccagtgatgaatttgttt 353  Q
    ||| |||||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  47520 ttccattctaatttatttccatctctttcaattcatttcaagtgatgaatttgttt 47575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 5517 - 5577
Alignment:
Q  148 cggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaagaata 208  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  5517 cggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 5577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 26381 - 26327
Alignment:
Q  149 ggtttggtttgcggtttgcatctcaacaactgaaccaaaccaaaccaaaccgcaa 203  Q
    ||||||||||||||||| ||| | | |||| |||||||||||||| |||||||||    
T  26381 ggtttggtttgcggttttcattttaccaaccgaaccaaaccaaacaaaaccgcaa 26327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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