View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11710_low_5 (Length: 360)
Name: NF11710_low_5
Description: NF11710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11710_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 7495796 - 7496137
Alignment:
| Q |
1 |
atctttggaagttggtaagtcttcgacatcttgagttggattattgccatgacttaacttctatgccacttggaataggaaagatgactaatcttcaaac |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
7495796 |
atctttggaagttggtaagtcttagacatcttgagttggatctttgtcataacttaacttctatgccacgtggaataggaaagatgactaatcttcaaag |
7495895 |
T |
|
| Q |
101 |
actgacaccgtttgtgttaaatacaacttctaaagatagtgctaaagctagtgagttaggaggattacataatttgaggggacgactcgagataactggc |
200 |
Q |
| |
|
| |||||| ||||||||| |||||||||||||||| ||||||||| ||||||| |||| ||||||||||| |||||||||||||||| ||||| ||| |
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|
| T |
7495896 |
attgacacactttgtgttagatacaacttctaaagacagtgctaaaactagtgaactagggggattacataacttgaggggacgactcgtgataaaaggc |
7495995 |
T |
|
| Q |
201 |
ttggaacatttgaggcattgtccaacagaagctaagcatatgaatttaatagggaagccacatcttgatcgattgacattgaattggaaggaagacactg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
7495996 |
ttggaacatttgaggcattgtccaacagaagctaaacatatgaatttaatagggaagtcacatcttcatcgattgacattgaattggaaggaagacactg |
7496095 |
T |
|
| Q |
301 |
ttggtgatggcaatgattttgaaaaagatgatatgattctac |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7496096 |
ttggtgatggcaatgattttgaaaaagatgatatgattctac |
7496137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 7529519 - 7529860
Alignment:
| Q |
1 |
atctttggaagttggtaagtcttcgacatcttgagttggattattgccatgacttaacttctatgccacttggaataggaaagatgactaatcttcaaac |
100 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
7529519 |
atctttggaagttagtaagtcttagacatcttgagttggattattgtcataacttaacttctatgccacgtggaataggaaagatgactaatcttcaaac |
7529618 |
T |
|
| Q |
101 |
actgacaccgtttgtgttaaatacaacttctaaagatagtgctaaagctagtgagttaggaggattacataatttgaggggacgactcgagataactggc |
200 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||| |||||||||||||||| |
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|
| T |
7529619 |
actgacacagtttgtgttagatacaacttctaaagatagtgctaaaactagtgagctaggaggattacataacttgaggggactactcgagataactggc |
7529718 |
T |
|
| Q |
201 |
ttggaacatttgaggcattgtccaacagaagctaagcatatgaatttaatagggaagccacatcttgatcgattgacattgaattggaaggaagacactg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||| | ||| ||||||||||||||||||||| || |
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|
| T |
7529719 |
ttggaacatttgaggcattgtccaacagaagctaagcctatgaatttaagagggaagtcacatcttgattggttggcattgaattggaaggaagacaatg |
7529818 |
T |
|
| Q |
301 |
ttggtgatggcaatgattttgaaaaagatgatatgattctac |
342 |
Q |
| |
|
||||||||| |||||| || ||||||||||| || ||||||| |
|
|
| T |
7529819 |
ttggtgatgccaatgagttagaaaaagatgaaataattctac |
7529860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 7521454 - 7521795
Alignment:
| Q |
1 |
atctttggaagttggtaagtcttcgacatcttgagttggattattgccatgacttaacttctatgccacttggaataggaaagatgactaatcttcaaac |
100 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7521454 |
atctttggaagttggtaattcttagacatcttgagttggatgattgtgataacttaacttctatgccacttggaataggaaagatgactaatcttcaaac |
7521553 |
T |
|
| Q |
101 |
actgacaccgtttgtgttaaatacaacttctaaagatagtgctaaagctagtgagttaggaggattacataatttgaggggacgactcgagataactggc |
200 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
7521554 |
actgacacactttgtgttagatacaacttctaaagacagtgctaaaactagtgagctaggaggattacataatttgaggggacgactcgagataaaaggc |
7521653 |
T |
|
| Q |
201 |
ttggaacatttgaggcattgtccaacagaagctaagcatatgaatttaatagggaagccacatcttgatcgattgacattgaattggaaggaagacactg |
300 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | || ||||||| ||||| ||| | |||| |
|
|
| T |
7521654 |
ttggaacatctgaggccttgtccaacagaagctaagcatatgaatttaatagggaagtcacatcttgattggttatcattgaaatggaatgaacagactg |
7521753 |
T |
|
| Q |
301 |
ttggtgatggcaatgattttgaaaaagatgatatgattctac |
342 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
7521754 |
ttggtgatggcaatgagtttgaaaaagatgatataattctac |
7521795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 7483397 - 7483738
Alignment:
| Q |
1 |
atctttggaagttggtaagtcttcgacatcttgagttggattattgccatgacttaacttctatgccacttggaataggaaagatgactaatcttcaaac |
100 |
Q |
| |
|
|||||||||| | |||||| ||| | |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7483397 |
atctttggaaatgggtaagacttaggcatcttgagttggattattgtgatgacttaacttctatgccacgtggaataggaaagatgactaatcttcaaac |
7483496 |
T |
|
| Q |
101 |
actgacaccgtttgtgttaaatacaacttctaaagatagtgctaaagctagtgagttaggaggattacataatttgaggggacgactcgagataactggc |
200 |
Q |
| |
|
||| |||| ||||||||| |||| ||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
7483497 |
acttacacaatttgtgttagatacgacttctaaagatagtgctaaaactagtgagctaggaggattacataacttgaggggactactcgagataactggc |
7483596 |
T |
|
| Q |
201 |
ttggaacatttgaggcattgtccaacagaagctaagcatatgaatttaatagggaagccacatcttgatcgattgacattgaattggaaggaagacactg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||| ||||| || |||||| |
|
|
| T |
7483597 |
ttggaacatttgaggcattgtccaacagaagctaagcatatgaatttaatagggaagtcacatcttcatcgattgagattgaagtggaaacaacacactg |
7483696 |
T |
|
| Q |
301 |
ttggtgatggcaatgattttgaaaaagatgatatgattctac |
342 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| || ||||||| |
|
|
| T |
7483697 |
ttggtgatggcaatgagtttgaaaaggatgaaataattctac |
7483738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 7721013 - 7720673
Alignment:
| Q |
1 |
atctttggaagttggtaagtcttcgacatcttgagttggattattgccatgacttaacttctatgccacttggaataggaaagatgactaatcttcaaac |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7721013 |
atctttagaagttggtaagtcttcgacatcttgagttggattattgccatgacttaacttctatgccaattggaataggaaagatgactaatcttcaaac |
7720914 |
T |
|
| Q |
101 |
actgacaccgtttgtgttaaatacaacttctaaagatagtgctaaagctagtgagttaggaggattacataatttgaggggacgactcgagataactggc |
200 |
Q |
| |
|
|||||||| |||||||||| |||| ||||||| ||| | ||||| | |||||| ||||||||||| ||||||||||||||| ||||||||||| |||| |
|
|
| T |
7720913 |
actgacacagtttgtgttagatacgacttctagagacaaatctaaaacaagtgagctaggaggattaaataatttgaggggacaactcgagataaatggc |
7720814 |
T |
|
| Q |
201 |
ttggaacatttgaggcattgtccaacagaagctaagcatatgaatttaatagggaagccacatcttgatcgattgacattgaattggaaggaagacactg |
300 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| || ||| || |
|
|
| T |
7720813 |
ttggaacatctgaggcattgtccaacagaagctaagcatatgaatttaatagggaagtcacatcttcgtcgattgacattgaattggaaacaacacattg |
7720714 |
T |
|
| Q |
301 |
ttggtgatggcaatgattttgaaaaagatgatatgattcta |
341 |
Q |
| |
|
|| |||||| |||||| ||||||||||||||||| |||||| |
|
|
| T |
7720713 |
ttagtgatgacaatgagtttgaaaaagatgatataattcta |
7720673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 7127738 - 7127397
Alignment:
| Q |
1 |
atctttggaagttggtaagtcttcgacatcttgagttggattattgccatgacttaacttctatgccacttggaataggaaagatgactaatcttcaaac |
100 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||| |||| || |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7127738 |
atctttggaagttggtaagccttagacatcttgagttggatgattgtgataacttaacttctatgccacgtggaataggaaagatgactaatcttcaaac |
7127639 |
T |
|
| Q |
101 |
actgacaccgtttgtgttaaatacaacttctaaagatagtgctaaagctagtgagttaggaggattacataatttgaggggacgactcgagataactggc |
200 |
Q |
| |
|
| |||||| ||||||||| |||||||||||||||| ||||||||| ||||||| |||| ||||||||||| |||||||||||||||| ||||| ||| |
|
|
| T |
7127638 |
attgacacactttgtgttagatacaacttctaaagacagtgctaaaactagtgaactagggggattacataacttgaggggacgactcgtgataaaaggc |
7127539 |
T |
|
| Q |
201 |
ttggaacatttgaggcattgtccaacagaagctaagcatatgaatttaatagggaagccacatcttgatcgattgacattgaattggaaggaagacactg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||| || |||||| |
|
|
| T |
7127538 |
ttggaacatttgaggcattgtccaacagaagctaaacatatgaatttaatagggaagtcacatcttcatcgattgacattgaattggaaacaacacactg |
7127439 |
T |
|
| Q |
301 |
ttggtgatggcaatgattttgaaaaagatgatatgattctac |
342 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||| ||||||| |
|
|
| T |
7127438 |
ttggtgatgagaatgagtttgaaaaggatgatataattctac |
7127397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 343
Target Start/End: Complemental strand, 7717180 - 7716841
Alignment:
| Q |
4 |
tttggaagttggtaagtcttcgacatcttgagttggattattgccatgacttaacttctatgccacttggaataggaaagatgactaatcttcaaacact |
103 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7717180 |
tttggaagttggtaagtcttagacatcttgagttggatgattgtaataacttaacttctatgccacttggaataggaaagatgactaagcttcaaacact |
7717081 |
T |
|
| Q |
104 |
gacaccgtttgtgttaaatacaacttctaaagatagtgctaaagctagtgagttaggaggattacataatttgaggggacgactcgagataactggcttg |
203 |
Q |
| |
|
||||| ||||||||| |||| || || | ||| ||||||||| ||||||| |||||||||||||||| |||||||||||||||| ||||| ||||||| |
|
|
| T |
7717080 |
gacacagtttgtgttcgatacgacctccagagacagtgctaaaactagtgaactaggaggattacataacttgaggggacgactcgtgataaatggcttg |
7716981 |
T |
|
| Q |
204 |
gaacatttgaggcattgtccaacagaagctaagcatatgaatttaatagggaagccacatcttgatcgattgacattgaattggaaggaagacactgttg |
303 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| | |||||||||||||||||| | | ||||||||| |
|
|
| T |
7716980 |
gaaaatttgaggcattgtccaacagaagctaagcacatgaatttaatagggaagtcacatcttcgtgaattgacattgaattggaatgtacacactgttg |
7716881 |
T |
|
| Q |
304 |
gtgatggcaatgattttgaaaaagatgatatgattctact |
343 |
Q |
| |
|
|||||| || ||| || |||||||||||||| |||||||| |
|
|
| T |
7716880 |
gtgatgccagtgacttggaaaaagatgatataattctact |
7716841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 7130311 - 7130267
Alignment:
| Q |
71 |
tggaataggaaagatgactaatcttcaaacactgacaccgtttgt |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
7130311 |
tggaataggaaaaatgactaatcttcaaacactgacacagtttgt |
7130267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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