View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11710_low_6 (Length: 272)

Name: NF11710_low_6
Description: NF11710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11710_low_6
NF11710_low_6
[»] chr2 (1 HSPs)
chr2 (14-272)||(41230056-41230314)
[»] chr8 (7 HSPs)
chr8 (192-272)||(37382294-37382374)
chr8 (181-272)||(37374952-37375043)
chr8 (181-272)||(37360130-37360221)
chr8 (181-272)||(37367843-37367934)
chr8 (85-114)||(32976483-32976512)
chr8 (25-110)||(37382442-37382527)
chr8 (84-112)||(30251384-30251412)
[»] chr3 (4 HSPs)
chr3 (183-269)||(39243459-39243545)
chr3 (84-114)||(22667513-22667543)
chr3 (84-114)||(22724152-22724182)
chr3 (84-112)||(5448556-5448584)
[»] chr1 (3 HSPs)
chr1 (74-114)||(28837273-28837313)
chr1 (85-114)||(6292602-6292631)
chr1 (84-112)||(41505786-41505814)
[»] chr7 (3 HSPs)
chr7 (80-114)||(21073247-21073281)
chr7 (84-113)||(11619088-11619117)
chr7 (74-114)||(22759271-22759311)
[»] chr4 (4 HSPs)
chr4 (80-114)||(3639094-3639128)
chr4 (80-114)||(21157878-21157912)
chr4 (79-115)||(28615633-28615669)
chr4 (86-114)||(47970406-47970434)
[»] chr6 (2 HSPs)
chr6 (86-115)||(32848528-32848557)
chr6 (84-112)||(35069542-35069570)
[»] chr5 (2 HSPs)
chr5 (84-113)||(15015954-15015983)
chr5 (80-112)||(15246945-15246977)


Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 41230056 - 41230314
Alignment:
Q  14 ggacatcaaaagtcaatatgaaattttgttttagattaagtgcatgtttgaactgacttatttttaatttgcttatttgagcttatctactgacataagc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41230056 ggacatcaaaagtcaatatgaaattttgttttagattaagtgcatgtatgaactgacttatttttaatttgcttatttgaccttatctactgacataagc 41230155  T
Q  114 ataagcactgataagttcataatacaaaaataaatagaagatcaagttaaatcaaaaatgcaaaccaaatacctttgatgtatctagaataggggtattt 213  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41230156 ataagcactgataagttcataatacagaaataaatagaagatcaagttaaatcaaaaatgcaaaccaaatacctttgatgtatctagaataggggtattt 41230255  T
Q  214 gcatccacagcttgtgtgcttatccctctcataacatgaattccaaactttaaacctaa 272  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41230256 gcatccacagcttgtgtgcttatccctctcataatatgaattccaaactttaaacctaa 41230314  T

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Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 37382374 - 37382294
Alignment:
Q  192 tgtatctagaataggggtatttgcatccacagcttgtgtgcttatccctctcataacatgaattccaaactttaaacctaa 272  Q
    ||||||||| |||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| || ||||||||    
T  37382374 tgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctctcataacatgaattccaaatttcaaacctaa 37382294  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 272
Target Start/End: Complemental strand, 37375043 - 37374952
Alignment:
Q  181 aatacctttgatgtatctagaataggggtatttgcatccacagcttgtgtgcttatccctctcataacatgaattccaaactttaaacctaa 272  Q
    |||||| ||| ||||||||| |||||||| ||||||| ||||||||||||||| ||||||  ||||| ||||||||||||||||||||||||    
T  37375043 aataccgttgctgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatatgaattccaaactttaaacctaa 37374952  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 272
Target Start/End: Complemental strand, 37360221 - 37360130
Alignment:
Q  181 aatacctttgatgtatctagaataggggtatttgcatccacagcttgtgtgcttatccctctcataacatgaattccaaactttaaacctaa 272  Q
    |||||| ||| ||||||||| |||||||| ||||||| ||||||||||||||| ||||||  ||||| ||||||||||||||| ||||||||    
T  37360221 aataccgttgttgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatatgaattccaaacttcaaacctaa 37360130  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 272
Target Start/End: Original strand, 37367843 - 37367934
Alignment:
Q  181 aatacctttgatgtatctagaataggggtatttgcatccacagcttgtgtgcttatccctctcataacatgaattccaaactttaaacctaa 272  Q
    |||||| ||| ||||||||| |||||||| ||||||| ||||||||||||||| ||||||  ||||| ||||||||||||||| ||||||||    
T  37367843 aataccgttgttgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatatgaattccaaacttcaaacctaa 37367934  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 32976512 - 32976483
Alignment:
Q  85 cttatttgagcttatctactgacataagca 114  Q
    ||||||||||||||||||||||||||||||    
T  32976512 cttatttgagcttatctactgacataagca 32976483  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 37382527 - 37382442
Alignment:
Q  25 gtcaatatgaaattttgttttagattaagtgcatgtttgaactgacttatttttaatttgcttatttgagcttatctactgacata 110  Q
    ||||||| ||| ||||||||||| ||| |||  | |||||| || |||||||| |||| ||||||||||| ||||| ||| |||||    
T  37382527 gtcaataagaacttttgttttaggttacgtgtctctttgaattggcttattttgaattcgcttatttgagtttatccacttacata 37382442  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 112
Target Start/End: Original strand, 30251384 - 30251412
Alignment:
Q  84 gcttatttgagcttatctactgacataag 112  Q
    |||||||||||||||||||||||||||||    
T  30251384 gcttatttgagcttatctactgacataag 30251412  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 183 - 269
Target Start/End: Complemental strand, 39243545 - 39243459
Alignment:
Q  183 tacctttgatgtatctagaataggggtatttgcatccacagcttgtgtgcttatccctctcataacatgaattccaaactttaaacc 269  Q
    |||| ||| ||||||||| ||||| || |||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39243545 taccgttgttgtatctaggataggcgtgtttgcattgacagcttgtgtgcttatccctctcataacatgaatcccaaactttaaacc 39243459  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 114
Target Start/End: Complemental strand, 22667543 - 22667513
Alignment:
Q  84 gcttatttgagcttatctactgacataagca 114  Q
    |||||||||||||||||||||||||||||||    
T  22667543 gcttatttgagcttatctactgacataagca 22667513  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 114
Target Start/End: Complemental strand, 22724182 - 22724152
Alignment:
Q  84 gcttatttgagcttatctactgacataagca 114  Q
    |||||||||||||||||||||||||||||||    
T  22724182 gcttatttgagcttatctactgacataagca 22724152  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 112
Target Start/End: Complemental strand, 5448584 - 5448556
Alignment:
Q  84 gcttatttgagcttatctactgacataag 112  Q
    |||||||||||||||||||||||||||||    
T  5448584 gcttatttgagcttatctactgacataag 5448556  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 28837273 - 28837313
Alignment:
Q  74 tttttaatttgcttatttgagcttatctactgacataagca 114  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  28837273 tttttgattggcttatttgagcttatctactgacataagca 28837313  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 6292631 - 6292602
Alignment:
Q  85 cttatttgagcttatctactgacataagca 114  Q
    ||||||||||||||||||||||||||||||    
T  6292631 cttatttgagcttatctactgacataagca 6292602  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 112
Target Start/End: Complemental strand, 41505814 - 41505786
Alignment:
Q  84 gcttatttgagcttatctactgacataag 112  Q
    |||||||||||||||||||||||||||||    
T  41505814 gcttatttgagcttatctactgacataag 41505786  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 21073281 - 21073247
Alignment:
Q  80 atttgcttatttgagcttatctactgacataagca 114  Q
    |||||||||||| ||||||||||||||||||||||    
T  21073281 atttgcttatttaagcttatctactgacataagca 21073247  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 113
Target Start/End: Original strand, 11619088 - 11619117
Alignment:
Q  84 gcttatttgagcttatctactgacataagc 113  Q
    ||||||||||||||||||||||||||||||    
T  11619088 gcttatttgagcttatctactgacataagc 11619117  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 22759311 - 22759271
Alignment:
Q  74 tttttaatttgcttatttgagcttatctactgacataagca 114  Q
    |||||||||  ||||||||||||||||||||| ||||||||    
T  22759311 tttttaattgacttatttgagcttatctactggcataagca 22759271  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 3639094 - 3639128
Alignment:
Q  80 atttgcttatttgagcttatctactgacataagca 114  Q
    |||||||||||||||||||||||| ||||||||||    
T  3639094 atttgcttatttgagcttatctaccgacataagca 3639128  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 21157912 - 21157878
Alignment:
Q  80 atttgcttatttgagcttatctactgacataagca 114  Q
    ||||||||||||||||| |||||||||||||||||    
T  21157912 atttgcttatttgagctcatctactgacataagca 21157878  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 28615669 - 28615633
Alignment:
Q  79 aatttgcttatttgagcttatctactgacataagcat 115  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  28615669 aattggcttatttgagcttatctaatgacataagcat 28615633  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 114
Target Start/End: Complemental strand, 47970434 - 47970406
Alignment:
Q  86 ttatttgagcttatctactgacataagca 114  Q
    |||||||||||||||||||||||||||||    
T  47970434 ttatttgagcttatctactgacataagca 47970406  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 115
Target Start/End: Original strand, 32848528 - 32848557
Alignment:
Q  86 ttatttgagcttatctactgacataagcat 115  Q
    ||||||||||||||||||||||||||||||    
T  32848528 ttatttgagcttatctactgacataagcat 32848557  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 112
Target Start/End: Original strand, 35069542 - 35069570
Alignment:
Q  84 gcttatttgagcttatctactgacataag 112  Q
    |||||||||||||||||||||||||||||    
T  35069542 gcttatttgagcttatctactgacataag 35069570  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 113
Target Start/End: Complemental strand, 15015983 - 15015954
Alignment:
Q  84 gcttatttgagcttatctactgacataagc 113  Q
    ||||||||||||||||||||||||||||||    
T  15015983 gcttatttgagcttatctactgacataagc 15015954  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 15246977 - 15246945
Alignment:
Q  80 atttgcttatttgagcttatctactgacataag 112  Q
    ||||| |||||||||||||||||||||||||||    
T  15246977 atttgtttatttgagcttatctactgacataag 15246945  T

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