View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11711_high_2 (Length: 585)
Name: NF11711_high_2
Description: NF11711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11711_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 159 - 580
Target Start/End: Original strand, 36476750 - 36477171
Alignment:
| Q |
159 |
caaagattatctccaaacagtcactttgccaccttagtcgctctctaaccaccacgggggatgcaaagatgttacgtcacacataacttggactatggtt |
258 |
Q |
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| T |
36476750 |
caaagattatctccaaacattcactttgctatcttagtcgctctctaaccaccacgggggatgcaaagatgttacgtcacacataacttggactatggtt |
36476849 |
T |
|
| Q |
259 |
gaactgagcctcaaggaaccccttgtttgggtaatatctatctttgaaattttttgataccataccatagcataagaggcggatcatgaccctaagcagt |
358 |
Q |
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| T |
36476850 |
gaactgagcctcaaggaaccccttgtttgggtaatatctatctttgaaattttttgatgccataccatagcataagaggcggatcaggaccctaagcagt |
36476949 |
T |
|
| Q |
359 |
gtgtgaacttattaactcaattaataataaaataattaaattagtaagtgtatatttgcaatttacaccttacagtttattttacaaacttttacttata |
458 |
Q |
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| T |
36476950 |
gtgtgaacttattaactcaattaataataaaataattatattagtaagtgtatatttgcaatttacaccttacagtttattttacaaacttttacttata |
36477049 |
T |
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| Q |
459 |
tcttgttaacaagtctactaaaaaatgagcgagtgtaagttaacaagttttaatattctaacttgcatagtcaaattaaaaccatgaaaatggtggaaac |
558 |
Q |
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| T |
36477050 |
tcttgttaacaaatctactaaaaaatgagcgagtgtaagttaacaagttttaatattctaacttgcatagtcaaattaaaaccatgaaaatggtggaaac |
36477149 |
T |
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| Q |
559 |
ccatatatacctctgtgctcct |
580 |
Q |
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| T |
36477150 |
ccatatatacctctgtgttcct |
36477171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 36476522 - 36476706
Alignment:
| Q |
1 |
gaactggtatttttaatatctctgtttgtcccttgggttgaaattaaatattttgcagtatatatgtacgccaacatcatataatgtctgctacatgtaa |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36476522 |
gaactggtattttcaatatctctgtttgtcccttgggttgaaattaaatattttgcagtatatctgtacgccaacatcatataatgtctgctacatgtaa |
36476621 |
T |
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| Q |
101 |
ttcttcatacccttgagatggattggaagtcacccaagcactttcatcgttaagtaaccaaagattatctccaaacagtcactttg |
186 |
Q |
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| T |
36476622 |
ttcttcatacccttgagatggattggaagtcacccaagcactttcatcgttaagtaaccaaag-ttgtctccaaacattcactttg |
36476706 |
T |
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