View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11711_high_3 (Length: 504)

Name: NF11711_high_3
Description: NF11711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11711_high_3
NF11711_high_3
[»] chr6 (9 HSPs)
chr6 (17-324)||(9998906-9999213)
chr6 (56-275)||(10004671-10004890)
chr6 (58-275)||(9991820-9992037)
chr6 (57-275)||(10013209-10013427)
chr6 (400-504)||(9998800-9998904)
chr6 (398-504)||(10013039-10013145)
chr6 (405-504)||(9991645-9991744)
chr6 (410-504)||(10004496-10004590)
chr6 (301-359)||(33433750-33433808)
[»] chr7 (3 HSPs)
chr7 (89-184)||(33354068-33354163)
chr7 (75-184)||(33347014-33347123)
chr7 (308-365)||(10386942-10386999)
[»] chr2 (1 HSPs)
chr2 (308-348)||(36501906-36501946)


Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 9999213 - 9998906
Alignment:
Q  17 atcagtactgtcaattgtaaatcgcggaaaatagctgttttgtataccagtggtgatgtcgttgccactttgtccttgccattgaatggtccatccacca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9999213 atcagtactgtcaattgtaaatcgcggaaaatagctgttttgtataccagtggtgatgttgttgccactttgtccttgccattgaatggtccatccacca 9999114  T
Q  117 cattgatatcctagattatcagcatgacttccagcaacaagtatttttgaagcctttttaggaagaggaagtatcggcttatcaacattttcaccattct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9999113 cattgatatcctagattatcagcatgacttccagcaacaagtattttggaagcctttttaggaagaggaagtatcggcttatcaacattttcaccattct 9999014  T
Q  217 ttaatagtaccaatgatttcctcaccgcttccctagccaattccctatgctcctgtcaacaccaaacattttgaacgatcttacgattactattgattga 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9999013 ttaatagtaccaatgatttcctcaccgcttccctagccaattccctatgctcctgtcaacaccaaacattttaaacgatcttacgattactattgattga 9998914  T
Q  317 cagtgtaa 324  Q
    ||||||||    
T  9998913 cagtgtaa 9998906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 56 - 275
Target Start/End: Complemental strand, 10004890 - 10004671
Alignment:
Q  56 ttgtataccagtggtgatgtcgttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaaca 155  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10004890 ttgtataccagtggtgatgttgttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaaca 10004791  T
Q  156 agtatttttgaagcctttttaggaagaggaagtatcggcttatcaacattttcaccattctttaatagtaccaatgatttcctcaccgcttccctagcca 255  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10004790 agtatttttgaagactttttaggaagaggaagtatcggcttatcaacattttcaccattctttaatagtaccaatgattttctcaccgcttccctagcca 10004691  T
Q  256 attccctatgctcctgtcaa 275  Q
    ||||||||||||||||||||    
T  10004690 attccctatgctcctgtcaa 10004671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 58 - 275
Target Start/End: Complemental strand, 9992037 - 9991820
Alignment:
Q  58 gtataccagtggtgatgtcgttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacaag 157  Q
    |||||||| | ||||||| |||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9992037 gtataccactagtgatgttgttgccactaagtccttgccactgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacgag 9991938  T
Q  158 tatttttgaagcctttttaggaagaggaagtatcggcttatcaacattttcaccattctttaatagtaccaatgatttcctcaccgcttccctagccaat 257  Q
    |||||||| ||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9991937 tatttttggagcctttttaggaagaggaagaagcggcttatcagcattttcaccattctttaatagtaccaatgatttcctcacagcttccctagccaat 9991838  T
Q  258 tccctatgctcctgtcaa 275  Q
    ||||||||||||||||||    
T  9991837 tccctatgctcctgtcaa 9991820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 57 - 275
Target Start/End: Complemental strand, 10013427 - 10013209
Alignment:
Q  57 tgtataccagtggtgatgtcgttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacaa 156  Q
    ||||||||||| || |||| ||| ||||||||||||||||||  ||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||    
T  10013427 tgtataccagtagtcatgttgtttccactttgtccttgccatgtaatggtccatccaccacattgatttcctatattatcagcatggcttccagcaacaa 10013328  T
Q  157 gtatttttgaagcctttttaggaagaggaagtatcggcttatcaacattttcaccattctttaatagtaccaatgatttcctcaccgcttccctagccaa 256  Q
    ||||||||| ||||||||||||||||||||||||||||||||||  | ||| ||| ||||| |||||||||||||||||||| || ||||| ||||||||    
T  10013327 gtatttttggagcctttttaggaagaggaagtatcggcttatcagaacttttaccgttcttcaatagtaccaatgatttcctaacagcttctctagccaa 10013228  T
Q  257 ttccctatgctcctgtcaa 275  Q
    ||| |||||||||||||||    
T  10013227 ttctctatgctcctgtcaa 10013209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 400 - 504
Target Start/End: Complemental strand, 9998904 - 9998800
Alignment:
Q  400 ctctgagctgatcgactaacctggctcccgagctgatcggcaaggctgtaatcagccaatggattttcaaataggcccataacaaactttactctcaaaa 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9998904 ctctgagctgatcgactaacctggctcccgagctgatcggcaaggctgtaatcagccaatggattttcaaataggcccataacaaacttgactctcaaaa 9998805  T
Q  500 ttctc 504  Q
    |||||    
T  9998804 ttctc 9998800  T

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Target: chr6; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 398 - 504
Target Start/End: Complemental strand, 10013145 - 10013039
Alignment:
Q  398 aactctgagctgatcgactaacctggctcccgagctgatcggcaaggctgtaatcagccaatggattttcaaataggcccataacaaactttactctcaa 497  Q
    ||||||||| ||||||||||||| |||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  10013145 aactctgagttgatcgactaaccgggctcccgatttgatcggcaaggctgtaatcagctaatggattttcaaataggcccataacaaacttgactctcaa 10013046  T
Q  498 aattctc 504  Q
    |||||||    
T  10013045 aattctc 10013039  T

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Target: chr6; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 405 - 504
Target Start/End: Complemental strand, 9991744 - 9991645
Alignment:
Q  405 agctgatcgactaacctggctcccgagctgatcggcaaggctgtaatcagccaatggattttcaaataggcccataacaaactttactctcaaaattctc 504  Q
    |||| |||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  9991744 agctcatcgactaacctggctcccgagttgatcggtaaggctgtaatctgccaatggattttcaaatagtcccataacaaacttgactctcaaaattctc 9991645  T

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Target: chr6; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 410 - 504
Target Start/End: Complemental strand, 10004590 - 10004496
Alignment:
Q  410 atcgactaacctggctcccgagctgatcggcaaggctgtaatcagccaatggattttcaaataggcccataacaaactttactctcaaaattctc 504  Q
    ||||||||||| |||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10004590 atcgactaaccgggctaccgatttgatcggcaaggctgtaatcagccaatggattttcaaataggcccataacaaacttcactctcaaaattctc 10004496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 359
Target Start/End: Complemental strand, 33433808 - 33433750
Alignment:
Q  301 gattactattgattgacagtgtaaaaatctttacacttacagtgtatacaaataaaatc 359  Q
    |||||| ||||||||| |||||||||||||||||| | | |||||||| |||| |||||    
T  33433808 gattacgattgattgagagtgtaaaaatctttacattgagagtgtataaaaatgaaatc 33433750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 89 - 184
Target Start/End: Original strand, 33354068 - 33354163
Alignment:
Q  89 tccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacaagtatttttgaagcctttttaggaagagg 184  Q
    ||||||||||| ||||||||| |||||||| ||||||||||||||||  ||||| ||||| || ||||||||||||| | ||||||||||||||||    
T  33354068 tccttgccattcaatggtccagccaccacactgatatcctagattatttgcatggcttccggccacaagtatttttggaacctttttaggaagagg 33354163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 75 - 184
Target Start/End: Original strand, 33347014 - 33347123
Alignment:
Q  75 tcgttgccactttgtccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacaagtatttttgaagcctttt 174  Q
    |||||||||||   ||||||||||| ||||||||| ||||| || |||| |||||||||||  ||||| ||||| || |||||||| |||| | ||||||    
T  33347014 tcgttgccactgactccttgccattcaatggtccagccaccgcactgatgtcctagattatttgcatggcttccggccacaagtatctttggaacctttt 33347113  T
Q  175 taggaagagg 184  Q
    ||||||||||    
T  33347114 taggaagagg 33347123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 365
Target Start/End: Complemental strand, 10386999 - 10386942
Alignment:
Q  308 attgattgacagtgtaaaaatctttacacttacagtgtatacaaataaaatccaaatt 365  Q
    ||||||||||| ||||||| |||||||||| | ||| |||| |||| |||||||||||    
T  10386999 attgattgacattgtaaaattctttacactaaaagtatatataaatcaaatccaaatt 10386942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 36501946 - 36501906
Alignment:
Q  308 attgattgacagtgtaaaaatctttacacttacagtgtata 348  Q
    |||| |||||||||||||||| |||||||| ||||||||||    
T  36501946 attggttgacagtgtaaaaatatttacactgacagtgtata 36501906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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