View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11711_low_5 (Length: 429)
Name: NF11711_low_5
Description: NF11711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11711_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Original strand, 36476138 - 36476545
Alignment:
| Q |
19 |
attctcccaaatttttcagtttattttccaccaaattccccacatggttgctgcaaattaattcgtcttctgactaggaagattttccagcacgagaaat |
118 |
Q |
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| T |
36476138 |
attctcccaaatttttcagtttattttccaccaaattccccacatggttgctgcaaatcaattcgtcttctgactaggaagattttccagcacgagaaat |
36476237 |
T |
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| Q |
119 |
accaaatctgcaatatctgatgcatttccggcaatattctgccgctgattccagcatccagcttctgtccagacctgcgatgtattggacattgaatccc |
218 |
Q |
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| T |
36476238 |
accaaatctgcaatatctgatgcatttccggcaatattctgcagctgattccagcatccagcttctgtccagacctgcgatgtattggacattgaatccc |
36476337 |
T |
|
| Q |
219 |
tc-------tcataaccaatctctcgcgtgtaggaaggaagccatgagcacacctccgaatgaacaatttgatcttatttgggacctttaatttccagat |
311 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36476338 |
tctcataagtcataaccaatctctcgcgtgtaggaaggaagccatgagcacacctccgaatgaacaatttgatcttatttaggacctttaatttccagat |
36476437 |
T |
|
| Q |
312 |
tttgatccaatctccttgtattcttgacagagtattttccatttctatttagcctccacaccgttgtgtcctctccatgaaattgaactggtatttttaa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
36476438 |
tttgatccaatctccttgtattcttgacagagtattttccatttctatttagcctccacgccgttgtgtcctctccatgaaattgaactggtattttcaa |
36476537 |
T |
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| Q |
412 |
tatctctg |
419 |
Q |
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|||||||| |
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| T |
36476538 |
tatctctg |
36476545 |
T |
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